DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and C46A5.4

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_501272.2 Gene:C46A5.4 / 177558 WormBaseID:WBGene00016700 Length:1537 Species:Caenorhabditis elegans


Alignment Length:1379 Identity:233/1379 - (16%)
Similarity:430/1379 - (31%) Gaps:500/1379 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   612 QYGAPPRNI-TAIATSST--------TISLSWLPPPVERSNGRIIYYKVFFVEVGREDDEATTMT 667
            |.|.||.|: ::|..|||        ...:::||     ::|.|.                 |:.
 Worm   379 QLGVPPANLDSSICRSSTGKPCLLAGNNKINFLP-----TSGAIY-----------------TIW 421

  Fly   668 LNMTSIVLDEL----KRWTEYKIWVLAGTSVGDGPRSH-------PIIL-RTQEDVPGDPQDVKA 720
            :...:::.|:|    ..|.:.|::..| ..:......|       |::: :.|..|.|       
 Worm   422 MRQHNVIADKLASVNPHWDDQKVFEEA-RRITIAQFQHITFNEMVPVLVGKEQLRVMG------- 478

  Fly   721 TPLNSTSIHVSWKPPLEKDRNGIIRGYHIHAQELRDE------GKGFLN-EPFKFDVVDTLEFNV 778
                           ::..:||...||.|:.......      |:.||. .|.:|::.|. .|: 
 Worm   479 ---------------IKLQKNGYDSGYDINIDSSASNVFASAAGQFFLTLLPSQFNIEDK-RFS- 526

  Fly   779 TGLQPDTKYSIQVAALTRKGDGDRSAAIVVKTP---GGVPVRPTVSLKIMEREPIVSIE------ 834
            |..:...|:....|.:..||..|.....::..|   .|:...|.:.....:::...|::      
 Worm   527 TKSESLLKHFNDPALIYEKGRIDGMLKFLLNAPIEKPGLHSSPLLRTAFQKKDIADSVDIIAMVI 591

  Fly   835 -----------LEWERPAQTYGELRGYRLRWGVKDQALKEEMLSGPQMTKKRFDNLERGVEYEFR 888
                       |:|    :|:.:|..:       ...|..:.:..|.:....|:.|     ||  
 Worm   592 QMGRDHGLPSYLQW----RTFCKLDDF-------SSFLALQTIFKPSVNISDFERL-----YE-- 638

  Fly   889 VAGSNHIGIGQETVKIF------QTPEGTPGGPPSNITIRFQTPDVLCVTWDPPTREHRNGIITR 947
                     ..|.:.:|      |..:|:..|           |...|:.      .|:.....|
 Worm   639 ---------SPEDIDVFVGGLSEQPTKGSLLG-----------PTFACLF------AHQMAQTKR 677

  Fly   948 YDVQFHKK--------IDHGLGSERNMTLRKAVFTNLEENTEYIFRVRAYTKQGAGPFSDKLIVE 1004
            .|..:::.        :|. :...|..|:.:.:.    :||:.:..|:.:.      ||      
 Worm   678 GDRFWYENFVSPSAFTVDQ-IDEIRKTTMARIIC----DNTDTVTHVQHHA------FS------ 725

  Fly  1005 TERDMGRAPMSLQAEATSEQTAEIWWEPVTSRGKLLGYKIFYTMTAVEDLDDWQTKTVGLTESAD 1069
            ...|.|..|:|..:....:.     ::|          |.|        .|:.:..::.:|:.  
 Worm   726 LPDDYGNCPLSCNSTGIIQV-----FDP----------KAF--------KDEEKLTSLPITKE-- 765

  Fly  1070 LVNLEKFAQYAVAIAARFKNGLGRLSEKVTVRIKPEDVPLNLRAHDVSTHSMTLSWSPPIRLTPV 1134
              .:||..:..:....|::.|.||   :::.::. :..|..|.:|             .:.:.|.
 Worm   766 --TVEKVIRLGLRQWQRYEEGEGR---RISAQLS-DSSPSALLSH-------------ALLMAPK 811

  Fly  1135 NYKISF--------DAMKVFVDSQGFSQTQIVPKREI-----ILKHYVKTHTINELSPFTTYN-- 1184
            ...|..        :|..:.:...|..:.:.:|..:|     ||........|...:||...:  
 Worm   812 KESIDIARTASVLREATNILISGNGLDKDERLPDLDIGTLQKILPQIDVGSVIGNFTPFLARDPL 876

  Fly  1185 ----VNVSAIPSDYS--YRP----------PTKITVTTQM------AAPQPMVKPDFYGVVNGEE 1227
                .....:|.|::  ||.          |......|||      |.......|....|:..| 
 Worm   877 PKEQCLPEPLPCDHTSKYRTYSGWCNNLKNPKFGNAFTQMRRLLDPAYDDGFDTPRTRSVLGSE- 940

  Fly  1228 ILVILPQASE---------------------EYGPISHYYLVVVPEDKS---------------- 1255
                ||.|.:                     ::|.|..:.::..|..:.                
 Worm   941 ----LPSARKISNIVHSDAPKFHVKFTHMLMQFGQILDHDMMHSPISRGPKNTILNCSSCDSAQT 1001

  Fly  1256 -NLHKIPDQF-LTDDLLPGRNKPERPNA-PYIAAKFPQRSIPFTFHLGSGDDYHN----FTNRKL 1313
             ::|..|.:. ..|...|.::...||.. |:..:...|.|:.|...|.....:.:    :.:.:.
 Worm  1002 LSIHCFPIKIEANDPFFPSKHSDGRPRCMPFARSLLAQVSLGFRNQLNQLTSFLDASTIYGSTQC 1066

  Fly  1314 EREKRYRIFVRAVVDTPQKHLYTSSPFSEFLSLDMREA-PPGERPHRPDPNWPAEPEVSVNRNKD 1377
            |..| .|:|      :..|..:|...|:       :|| |.|                  |:.:|
 Worm  1067 EANK-LRLF------SDGKLNFTDLGFN-------KEALPQG------------------NQERD 1099

  Fly  1378 EPEILWVVLPLMVSTFIVSTALIVLC--VVKRRRQPCKTPDQAAVTRPLMAADLGAGPTPSDPVD 1440
                                     |  |::.|::.|           .:|.|            
 Worm  1100 -------------------------CRSVLQNRQRRC-----------FVAGD------------ 1116

  Fly  1441 MRRLNFQTPGMISHPPIPISEFANHIER-LKSNDNQKFSQEYESIEPGQQFTWDNSNLEHNKSKN 1504
             .|.|.| ||:.:...|.:.|. |.|.| ||..:|                .|.:..|   ..::
 Worm  1117 -ERSNEQ-PGLTAIHNIFLREH-NRIARYLKQINN----------------FWSDEKL---FQES 1159

  Fly  1505 RYANVTAYDH--SRVQLPAVEGVVGSDY-----INANYCDGYRKH-NAYVATQGPLQETFVDFWR 1561
            |..|:....|  .:..||.|.|....:.     ..|.|.:||... :|.::     ||.....:|
 Worm  1160 RRINIAQLQHIIYKEWLPVVLGCQNMEKWGLMPQTAGYFEGYDDQCDATIS-----QEMSTSAFR 1219

  Fly  1562 MCWELKTATIVMMTRLEERTRIKCDQYWPTRGTETYG--------------QIFVTITETQELA- 1611
            ....|...   :.||:.:..:...:.   ...|||:.              .|.:.:.....:| 
 Worm  1220 FGHSLIRG---VFTRMNDNFQNMTNH---VNLTETFSNPSPVYDKNSGHMESILMGLIGANSMAF 1278

  Fly  1612 ----TYSIRTFQLCRQGFN-DRREIKQLQFTAWPDHGVPDHPAPFLQFLRRC------------- 1658
                ..::|.....:.|.. ...::..:......||||..:.|    :.:.|             
 Worm  1279 DRHIVTAVRNHLFAKPGGPLTGLDLPAVNIQRGRDHGVQGYNA----YRKHCGLRKASAFSDLRD 1339

  Fly  1659 ----RALTPPESG----------PVIVHCS----AGVGRT-GCYIVIDSMLERMKHEKIIDIYGH 1704
                .|:|..|:.          |.|:..|    :.||.| .|.|.     |:|:..|..|.:.:
 Worm  1340 VMNSEAVTALETAYAHVDDIDLFPGIMSESPTRGSLVGPTLACLIG-----EQMQRLKKCDRFYY 1399

  Fly  1705 VTCLRAQRNYMVQ-TEDQYIFIHDAILEAIICGVTEVPARNLHTHLQKLLITEPGETISGMEVEF 1768
            .|     .:.||: |.||.:.|..|.|..|||..:|..|     ::|..:...| :.::...:..
 Worm  1400 ET-----SDSMVRFTPDQLVEIRKASLSRIICDNSEYAA-----NIQPNVFLMP-DDLTNSPMTC 1453

  Fly  1769 KKLSNVKMDSSKFV 1782
            .:||.:  |.:|:|
 Worm  1454 SELSEI--DLNKWV 1465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020 19/111 (17%)
FN3 712..810 CDD:238020 19/104 (18%)
FN3 832..907 CDD:238020 13/97 (13%)
FN3 914..1005 CDD:238020 14/98 (14%)
FN3 1012..1101 CDD:238020 13/88 (15%)
fn3 1106..1198 CDD:278470 17/112 (15%)
PTPc 1476..1731 CDD:214550 56/315 (18%)
PTPc 1503..1731 CDD:238006 54/288 (19%)
PTPc 1763..2022 CDD:214550 5/20 (25%)
PTPc 1791..2022 CDD:238006
C46A5.4NP_501272.2 An_peroxidase 182..717 CDD:281139 71/433 (16%)
peroxinectin_like 334..712 CDD:188655 69/428 (16%)
An_peroxidase 894..1429 CDD:281139 119/666 (18%)
peroxinectin_like 1045..1428 CDD:188655 93/509 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.