DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and Mpo

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_034954.2 Gene:Mpo / 17523 MGIID:97137 Length:718 Species:Mus musculus


Alignment Length:434 Identity:79/434 - (18%)
Similarity:140/434 - (32%) Gaps:159/434 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1411 PCKTPDQAAVTRPLMAADLGAGPTPS--------------DPVDMRRLN--------FQTPGMIS 1453
            ||...:::|.....:|.|:.:...|.              ....::|||        :|....|.
Mouse   360 PCLLTNRSARIPCFLAGDMRSSEMPELTSMHTLFVREHNRLATQLKRLNPRWNGEKLYQEARKIV 424

  Fly  1454 HPPIPISEFANHIER-LKSNDNQKFSQEY----ESIEPGQQFTWDNSNLEHNKSKNRYANVTAYD 1513
            ...:.|..:.:::.. |.....:|:..:|    :|::|              :..|.:.|...|.
Mouse   425 GAMVQIITYRDYLPLVLGPAAMKKYLPQYRSYNDSVDP--------------RIANVFTNAFRYG 475

  Fly  1514 HSRVQLPAVEGVVGSDYINANYCDGYRKHNAYVAT----QGPLQETFVDFWRMCWE-----LKTA 1569
            |:.:| |.:                :|.:|.|..|    :.||.:.|...||:..|     :...
Mouse   476 HTLIQ-PFM----------------FRLNNQYRPTGPNPRVPLSKVFFASWRVVLEGGIDPILRG 523

  Fly  1570 TIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTITETQELATYSIRTF-QLCRQGFNDRREIKQ 1633
            .:....:|..:.:|..|                   |.:|      |.| |:.|.|.    ::..
Mouse   524 LMATPAKLNRQNQIVVD-------------------EIRE------RLFEQVMRIGL----DLPA 559

  Fly  1634 LQFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYI----VIDSMLERMK 1694
            |......|||:|.:.|     .||...|..|.:          ||..|..:    :...::.:..
Mouse   560 LNMQRSRDHGLPGYNA-----WRRFCGLPQPST----------VGELGTVLKNLELARKLMAQYG 609

  Fly  1695 HEKIIDIY-----------GHV----TCLRAQRNYMVQTEDQYIFIHDAI-------------LE 1731
            ....|||:           |.|    .||...:...::..|::.:.:..:             |.
Mouse   610 TPNNIDIWMGGVSEPLEPNGRVGQLLACLIGTQFRKLRDGDRFWWENPGVFSKQQRQALASISLP 674

  Fly  1732 AIIC---GVTEVPARNL---HTH---------LQKLLITEPGET 1760
            .|||   |:|.|...|:   :|:         |.||.:|...||
Mouse   675 RIICDNTGITTVSKNNIFMSNTYPRDFVSCNTLPKLNLTSWKET 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550 51/300 (17%)
PTPc 1503..1731 CDD:238006 47/269 (17%)
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
MpoNP_034954.2 An_peroxidase 147..685 CDD:281139 69/399 (17%)
myeloperoxidase_like 289..702 CDD:188656 73/416 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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