DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and T13H5.1

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_001122640.1 Gene:T13H5.1 / 174359 WormBaseID:WBGene00011755 Length:864 Species:Caenorhabditis elegans


Alignment Length:861 Identity:213/861 - (24%)
Similarity:351/861 - (40%) Gaps:227/861 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1336 TSSPFSEF-------LSLDMREAPPGE---RPHRPDPNWPAEPEVSVN---RNKDEPEILWVVLP 1387
            ::|.||.|       :.|||.    |.   .||....:...:|..||:   ||::..:       
 Worm     6 STSKFSSFFRRKPKDVKLDMN----GNGLVSPHDEHQDELEDPMASVSIRVRNEEGDD------- 59

  Fly  1388 LMVSTFIVSTALIV--LCVVKRRRQPCKTPDQAAV---TRPLMAADLGAGPTPSDPVDMRRLNFQ 1447
                 |:||.:.:|  :..:..||...:....|:.   :||..:|.......|.:.::.....|:
 Worm    60 -----FVVSPSDVVDNINEINSRRSSRRDSTPASSIRRSRPSSSAYFNENGEPIEGINRPPRKFK 119

  Fly  1448 T------------------------PGM-----------------------------------IS 1453
            :                        ||:                                   :.
 Worm   120 SMDHIMMRLFKPSKARKSKSVRDAEPGLRSMLYGLSQKQEKEEAIAKKLAKKMIIQEEKAMQAVP 184

  Fly  1454 HPPIPISEFANHI-ERLKSNDNQKFSQEYESIEPGQQFTWDNSNLEHNK----------SKNRYA 1507
            ..|:..|:|..:: ||.|.  ...|..||..:         |.::::||          .:|.|.
 Worm   185 TSPVDASKFVAYVQERRKK--RILFKGEYLMV---------NRSIDNNKCRCDVGSTMMDRNPYP 238

  Fly  1508 NVTAYDHSRVQLPAVEGVVGSDYINANYCDGYRKHNAYVATQG----PLQETFVDFWRMCWELKT 1568
            :...||::||.||.::|...|.||||:|.:.:.:..|||.||.    |:.   .:||||.|||.:
 Worm   239 DTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMN---AEFWRMVWELGS 300

  Fly  1569 ATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTITETQELATYS---IRTFQLCRQGFN--DR 1628
            ..|||:|::.:..|:.|.||||.    |..|......||.|:.|||   ||||:|.|....  :.
 Worm   301 NCIVMLTKVFDFMRVMCLQYWPL----TKFQFREIEVETTEVKTYSHFVIRTFKLTRTTPESIET 361

  Fly  1629 REIKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTP--PESGPVIVHCSAGVGRTGCYIVIDSMLE 1691
            |.:|...||.|.....| :.:.|::..||.|....  |...|::||||.|.||:|.::.:|:.||
 Worm   362 RIVKHFHFTEWELDSFP-YISAFIELRRRVRQFMEKNPVEAPMVVHCSNGAGRSGAFLALDANLE 425

  Fly  1692 RMKHEKIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARNL----------- 1745
            .||....:|.:.:...|...|.:::.:.:||:||::.:.||::|.|..:....|           
 Worm   426 LMKKTGQLDFFEYAKTLVNSRPHLIDSVEQYMFIYEVLSEAVMCNVQPIEMHLLKERSSMYKAKK 490

  Fly  1746 --------HTHLQKLLI-----TEPGETISGMEVEFKKLSNVKMDSSKFVTANLPCNKHKNRLVH 1797
                    .||..|||:     ...|:...|..:|                     |:.|||.|.
 Worm   491 NRELLETQETHENKLLMHLTPTLRIGDCAGGHRLE---------------------NRGKNRDVM 534

  Fly  1798 ILPYESSRVYLTPIHGIEGSD--YVNASFIDGYRYRSAYIAAQGPVQDAAEDFWRMLWEHNSTIV 1860
            ::|.:.:|.||..:|| |..|  |:||..:||:..::.:|..:.|.|...:.||.::::|....|
 Worm   535 VVPPDHARPYLQTLHG-ESKDYTYINAVEVDGFTRKAEFIVTEWPKQSTVDSFWTLIYDHACHTV 598

  Fly  1861 VMLTKLKEMGREKCFQYWPHER-SVRYQYYVVDPIAEYNMP------------QYKLREFKVTDA 1912
            |   .|...|.::.:..:.|.: ...|..::|:.:..:..|            .:::...||...
 Worm   599 V---NLSNQGSQRHYPSFIHNKGKANYGPFIVEIMNYHQYPAMTSHMVKVMKRPHQVPPMKVDPE 660

  Fly  1913 RDGSSR----------TVRQFQFID-------------WP-EQGVPKSGEGFIDFIGQVHKTKEQ 1953
            ..|.|:          |..|.|.||             || |..||.|..|.||.|......:::
 Worm   661 GKGVSKLTFMISDIMATGAQNQQIDAEVRICCVIQVRMWPIENKVPLSTTGLIDVIKMARSWRKR 725

  Fly  1954 FGQDGPIT----VHCSAGVGRSGVFITLSIVLERMQYEGVLDVFQTVRILRSQRPAMVQTEDQYH 2014
             ..|.|.|    |....||.|.||:|..:|.:::|..:..:|||..|:::|..||.::..:|:|.
 Worm   726 -APDRPETKPTIVMSHNGVSRVGVYIGANICIDQMDIDHEVDVFHAVKMMRINRPQLIDMKDEYK 789

  Fly  2015 FCYRAALEYLGSFDNY 2030
            :.|...|.:..:..:|
 Worm   790 YLYDVMLHWYMTNPDY 805

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495
FN3 <867..1269 CDD:442628
fn3 914..998 CDD:394996
R-PTPc-LAR-1 1498..1735 CDD:350401 88/257 (34%)
R-PTP-LAR-2 1784..2021 CDD:350402 73/279 (26%)
T13H5.1NP_001122640.1 PTPc 206..465 CDD:214550 90/275 (33%)
PTPc 517..797 CDD:214550 75/305 (25%)
Blue background indicates that the domain is not in the aligned region.

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