DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and Ptprg

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_063130015.1 Gene:Ptprg / 171357 RGDID:620774 Length:1475 Species:Rattus norvegicus


Alignment Length:1567 Identity:412/1567 - (26%)
Similarity:621/1567 - (39%) Gaps:429/1567 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   742 GIIRGYHIHAQ--------ELRDEGKGFLNEPFKFDVVDTLEFNVTGLQPDTKYSIQVAALTRKG 798
            |::.|:.|...        :|:|...|.|       .:..|.....|...:::....|....||.
  Rat    30 GVLPGWQIAVHILGPATHFDLKDYVSGCL-------AIAALTEGYVGTLQESRQGSSVQIRRRKA 87

  Fly   799 DGDRSAAIVVKTPGGV--P---VRPTVSLKIMEREPIVSIELEWERPAQTYGELRGYRLRWGVKD 858
            .||...|.     .|.  |   |..:||.....:.||               ::..:..|.|.:.
  Rat    88 SGDPYWAY-----SGAYGPEHWVTSSVSCGGSHQSPI---------------DILDHHARVGEEY 132

  Fly   859 QALKEEMLSGPQMTKKRFDNLERGVEYEFRVAGSNHIGIGQ--ETVKI------FQTPEGTPGGP 915
            |.|:   |.|       |||           ..||...:..  :||.|      |.:..|.||  
  Rat   133 QELQ---LDG-------FDN-----------ESSNKTWMKNTGKTVAILLKDDYFVSGAGLPG-- 174

  Fly   916 PSNITIRFQTPDVLCVTWDPPTREHRNGIITRYDVQFHKKIDHG-LGSERNMTLRK-----AVF- 973
                  ||:..                      .|:||....:| .|||.::..|:     .:| 
  Rat   175 ------RFKAE----------------------KVEFHWGHSNGSAGSEHSVNGRRFPVEMQIFF 211

  Fly   974 ----------TNLEEN-----TEYIFRVRAYTKQGAGPFSDKL--IVETERDMGRAPMSLQ---- 1017
                      |.:.||     ....|:|.........|....|  :|..|::....|..|:    
  Rat   212 YNPDDFDSFQTAISENRIIGAMAIFFQVSPRDNSALDPIIHGLKGVVHHEKETFLDPFVLRDLLP 276

  Fly  1018 ----------AEATSEQTAEIWWEPVTSRGKLLGY---KIFYTMTAVEDLDDWQTKTVGLTES-- 1067
                      ...|:...:||....|..|...:.|   :.||::...|..|  ..|:|....:  
  Rat   277 ASLGSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQD--HVKSVEYLRNNF 339

  Fly  1068 --ADLVNLEKFAQYAVA------IAARFKNGLGRLSEKVTVRIKPEDVPLNLRAHDVSTHSMTLS 1124
              ...:|....::.||.      :|....|.||..:.||.     ...|::::...::..::.:|
  Rat   340 RPQQALNDRVVSKSAVRDAWNHDLADFLDNPLGTEASKVC-----SSPPIHMKVQPLNQTALQVS 399

  Fly  1125 WS-------PPIRLTPVNYKISFDAMKVFVDSQGFSQTQIVPKREIILKHYVKTH------TINE 1176
            ||       |||    :||.||            :|.|:...::|   |.:.|..      ||:.
  Rat   400 WSQPETIYHPPI----MNYMIS------------YSWTKNEDEKE---KTFTKDSDKDLKATISH 445

  Fly  1177 LSPFTTYNVNVSAI-----PSDYS-----YRPPTKI-----TVTTQMAAPQPMVKPDFYGVVNGE 1226
            :||.:.|...|.|:     .||:|     ....|:|     .|.|.:....|....|...:.:|.
  Rat   446 ISPDSLYLFRVQAVCRNDMRSDFSQTMLFQANTTRIFQGTRIVKTGVPTASPASSADMAPISSGS 510

  Fly  1227 EILV--------------ILPQASEEY-------------------GPISHYYLVVVPEDKSNLH 1258
            ....              :.|.:|...                   |.||.:...|.|.......
  Rat   511 STWTSSGIPFSFVSMATGMGPSSSGSQATVASVVTSTLLAGLGFGGGGISSFPSTVWPTRLPTAS 575

  Fly  1259 KIPDQ-----FLTDDLL--PG--------------------------------------RNKPER 1278
            ....|     ..|.:.|  ||                                      ..|.|:
  Rat   576 AASKQAGRPVLATTEALASPGPDGDSAPTKDGEGAEEGEKEEKSESEDGEREQEEEEKDSEKKEK 640

  Fly  1279 PNAPYIAAKFPQRS---IPFTFHLGSGDDYH-NFTNRKLEREKRYRIFVRAVVDTPQKHLYTSSP 1339
            ..|.:.||:..|.:   .|.:.|..:.:..| .....:.:..       ..|.|.| .|:   .|
  Rat   641 SEATHTAAESDQTAPAPTPSSPHRTAQEGGHQTIPGHRQDHS-------APVTDQP-GHV---DP 694

  Fly  1340 FSEFLSLDMREAPP--------GERPHRPD-PNW-------------------PAEPEVSVNRNK 1376
            ..:.|.....:.||        |..|.||: |:.                   |||...|...::
  Rat   695 GLDTLVDTATQVPPTATEEHYSGSDPKRPEMPSKKPISRGDRFSEDSKFITVNPAEKNTSGMISR 759

  Fly  1377 DEPEILWVVLPLMVSTFIVSTALIVLCVV----------------KRRRQ--------------- 1410
            ..|..:..::||:|.:.:....|::|..|                :|.|:               
  Rat   760 PSPGRMEWIIPLIVVSALTFVCLVLLIAVLVYWRGCNKIKSKGFPRRSREVPSSGERGEKGSRKC 824

  Fly  1411 -------------PCKTPDQAAVTRPLMAADLGAGPTPSDPVDMRRLNFQTPGMISHPPIPISEF 1462
                         |...|:::....|:             |.||.             .||:.:|
  Rat   825 FQTAHFYVEDSSSPRVVPNESIPIIPI-------------PDDME-------------AIPVKQF 863

  Fly  1463 ANHIERLKSNDNQKFSQEYESIE---PGQQFTWDNSNLEHNKSKNRYANVTAYDHSRVQLPAVEG 1524
            ..||..|.||....||.::|.::   .....|.::||...||.||||.|:.|||||||:|..:.|
  Rat   864 GKHIGELYSNSQHGFSGDFEEVQRCTADMNITAEHSNHPDNKHKNRYINILAYDHSRVKLRPLPG 928

  Fly  1525 VVG--SDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTRIKCDQ 1587
            ...  ||||||||.|||.|..||:||||||:.||.|||||.||..|..|:|:|.|.|:.|.||||
  Rat   929 KDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIIMITNLVEKGRRKCDQ 993

  Fly  1588 YWPTRGTETYGQIFVTITETQELATYSIRTFQLCR-----------QGFNDRREIKQLQFTAWPD 1641
            ||||..||.||.|.||:..|:..|.|::|.|.:..           :|..:.|.:.|..:|.|||
  Rat   994 YWPTENTEEYGNIIVTLKSTEVHACYTVRRFSVRNTKVKKGQKGNPKGRQNERTVIQYHYTQWPD 1058

  Fly  1642 HGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEKIIDIYGHVT 1706
            .|||::..|.|.|:||..|...|:.|||:|||||||||||.||||||||:::|.:..:::.|.:.
  Rat  1059 MGVPEYALPVLTFVRRSSAARMPDMGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLK 1123

  Fly  1707 CLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARNLHTHLQKLLITEPGETISG---MEVEF 1768
            .:|.||||:||||:||||||||:||||:...|||.:..||:::..:||  ||  :.|   :|.:|
  Rat  1124 HIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSSQLHSYVNSILI--PG--VGGKTRLEKQF 1184

  Fly  1769 KKLSNVKMDSSKFVTANLPCNKHKNRLVHILPYESSRVYLTPIHGIEGSDYVNASFIDGYRYRSA 1833
            |.::.......:..:|...|||.|||...::|.|.:||.|.|:.|::|:||:|||:|.||...:.
  Rat  1185 KLITQCNAKYVECFSAQKECNKEKNRNSSVVPAERARVGLAPLPGMKGTDYINASYIMGYYRSNE 1249

  Fly  1834 YIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYWP-HERSVRYQYYVV-----D 1892
            :|..|.|:....:|||||:|:||:.|:|||...:.:..:: |.||| .|.|:..:.:.|     |
  Rat  1250 FIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDE-FVYWPSREESMNCEAFTVTLISKD 1313

  Fly  1893 PIAEYNMPQYKLREFKVTDARDGSSRTVRQFQFIDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQD 1957
            .:...|..|..:.:|.:...:|.....||.||...||....|.|..  .:.|..:  .:|...:|
  Rat  1314 RLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISST--FELINVI--KEEALARD 1374

  Fly  1958 GPITVHCSAGVGRSGVFITLSIVLERMQYEGVLDVFQTVRILRSQRPAMVQTEDQYHFCYRAALE 2022
            ||..||...|...:|:...|:.:.::::.|..:||||..:::...||.:....:||.|.|:|.|.
  Rat  1375 GPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFVYKAMLS 1439

  Fly  2023 YLGSFDN 2029
            .:.:.:|
  Rat  1440 LVSTKEN 1446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628 1/4 (25%)
FN3 712..810 CDD:238020 15/75 (20%)
FN3 832..898 CDD:214495 11/65 (17%)
FN3 <867..1269 CDD:442628 98/526 (19%)
fn3 914..998 CDD:394996 17/105 (16%)
R-PTPc-LAR-1 1498..1735 CDD:350401 134/249 (54%)
R-PTP-LAR-2 1784..2021 CDD:350402 80/242 (33%)
PtprgXP_063130015.1 None
Blue background indicates that the domain is not in the aligned region.

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