DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and Il6st

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_034690.3 Gene:Il6st / 16195 MGIID:96560 Length:917 Species:Mus musculus


Alignment Length:644 Identity:139/644 - (21%)
Similarity:224/644 - (34%) Gaps:169/644 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 VMLGSNLNLSCIAVGSPMPHVKWMKGSEDLTPENEMPIGRNVLQLIN-----------IQESANY 299
            |..|||....|:...:.:.|. ::..|..:...|...:.|..:.:||           :..|...
Mouse    38 VQRGSNFTAICVLKEACLQHY-YVNASYIVWKTNHAAVPREQVTVINRTTSSVTFTDVVLPSVQL 101

  Fly   300 TCIAASTLGQIDSVSVVKVQSL----PTAPTDVQISEVTATSVRLEWSYKGPEDLQYYVIQYKPK 360
            ||...| .|||:. :|..|..|    |..||::........::..:|.   |....|....|..|
Mouse   102 TCNILS-FGQIE
Q-NVYGVTMLSGFPPDKPTNLTCIVNEGKNMLCQWD---PGRETYLETNYTLK 161

  Fly   361 N--ANQAFSE---------ISGIITMYYVVRALSPYTEYEFYVIAVNNIGR-------------- 400
            :  |.:.|.:         :...:..|||        ..|.:|.|.|.:|:              
Mouse   162 SEWATEKFPDCQSKHGTSCMVSYMPTYYV--------NIEVWVEAENALGKVSSESINFDPVDKV 218

  Fly   401 --GPPSAPATCTTGDFS-----------FGGTKMESAPRNVQVRTLSSSTMVITWEPPETPNGQV 452
              .||...:...:.:.|           .||  :.....::|.||..:||.:      :.|    
Mouse   219 KPTPPYNLSVTNSEELSSILKLSWVSSGLGG--LLDLKSDIQYRTKDASTWI------QVP---- 271

  Fly   453 TGYKVYYTTNSNQPEASWNSQMVDNSELTTVSELTPHAIYTVRVQAYTSMGAG---PMSTPVQVK 514
                   ..::..|..|:           ||.:|.|...|..|:::....|.|   ..|......
Mouse   272 -------LEDTMSPRTSF-----------TVQDLKPFTEYVFRIRSIKDSGKGYWSDWSEEASGT 318

  Fly   515 AQQGVPSQPSNFRATDIGETAVTLQW--TKPTHSSENIVHY---ELYWNDTYANQAHHKRI---- 570
            ..:..||:|.:|             |  |.|:|..|    |   .|.|.....::|:.|.:    
Mouse   319 TYEDRPSRPPSF-------------WYKTNPSHGQE----YRSVRLIWKALPLSEANGKILDYEV 366

  Fly   571 ------SNSEAYTLDGL-----YPDTLYYIWLAARSQRGEGAT---TPPIPVRTKQYGAPPRNIT 621
                  |.|:.||:.|.     ..:..|...||||::.|:.|.   |.|.|..|..|...  |:.
Mouse   367 ILTQSKSVSQTYTVTGTELTVNLTNDRYVASLAARNKVGKSAAAVLTIPSPHVTAAYSVV--NLK 429

  Fly   622 AIATSSTTISLSWLPPPVERSNGRIIYYKVF-----FVEVGREDDEATTMTLNMTSIVLDELKRW 681
            |. .....:.:.|.|||...|. .|:.:.|.     .||..:::|    .|:|.|.:    ..|.
Mouse   430 AF-PKDNLLWVEWTPPPKPVSK-YILEWCVLSENAPCVEDWQQED----ATVNRTHL----RGRL 484

  Fly   682 TEYKIWVLAGTSV-GDGP-RSHPIILRTQEDVPGDPQDVKATPLNSTSIHVSWKPPLEKDRNGII 744
            .|.|.:.:..|.| ..|| .|..:....::..|.....|:...:......::|......|:||.|
Mouse   485 LESKCYQITVTPVFATGPGGSESLKAYLKQAAPARGPTVRTKKVGKNEAVLAWDQIPVDDQNGFI 549

  Fly   745 RGYHIHAQELRDEGKGFLNEPFKFDVVDT--LEFNVTGLQPDTKYSIQVAALTRKGDGD 801
            |.|.|..:  ...||..:..      ||:  .|:.::.|..||.|.:::||.|.:|..|
Mouse   550 RNYSISYR--TSVGKEMVVH------VDSSHTEYTLSSLSSDTLYMVRMAAYTDEGGKD 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352 19/82 (23%)
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216 18/78 (23%)
fn3 324..404 CDD:278470 18/106 (17%)
FN3 423..514 CDD:238020 17/93 (18%)
FN3 520..610 CDD:238020 29/112 (26%)
FN3 616..707 CDD:238020 23/97 (24%)
FN3 712..810 CDD:238020 24/92 (26%)
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550
PTPc 1503..1731 CDD:238006
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
Il6stNP_034690.3 Lep_receptor_Ig 26..112 CDD:399379 17/75 (23%)
FN3 125..213 CDD:419708 18/98 (18%)
FN3 220..319 CDD:238020 22/128 (17%)
WSXWS motif 308..312 0/3 (0%)
FN3 521..597 CDD:214495 21/83 (25%)
Box 1 motif 649..657
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 658..678
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 719..754
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 898..917
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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