DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and Ptpre

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_038964618.1 Gene:Ptpre / 114767 RGDID:620771 Length:719 Species:Rattus norvegicus


Alignment Length:724 Identity:293/724 - (40%)
Similarity:421/724 - (58%) Gaps:59/724 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly  1339 PFSEFL----SLDMREAPPGERPHRPDPNW------PAEPEVSVNRNKDEPEILWVVLPLMVSTF 1393
            ||...|    ||.:..|..|......:.||      |.:|..|      :|.:.|::|||::..|
  Rat    23 PFCPLLLASFSLSLATAGQGNDTTPTESNWTSTTAGPPDPGTS------QPLLTWLLLPLLLLLF 81

  Fly  1394 IVSTALIVL-----CVVKR--RRQPCKTPDQAAVTRPLMAADLGAGPTPSDPVDMRRLNFQTPGM 1451
            :::......     .||..  ::.|....::....|.::.:...:||.                 
  Rat    82 LLAAYFFRFRKQRKAVVNSNDKKMPNGILEEQEQQRVMLLSRSPSGPK----------------- 129

  Fly  1452 ISHPPIPISEFANHIERLKSNDNQKFSQEYESIEPGQ-QFTWDNSNLEHNKSKNRYANVTAYDHS 1515
             .:.|||:......|....::|.::|.:|:.|:..|. |.|::.:|.|.|:.||||.|:...||.
  Rat   130 -KYFPIPVEHLEEEIRVRSADDCKRFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPNDHC 193

  Fly  1516 RVQLPAVEGVVGSDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEER 1580
            ||.|..::|:..||||||:|.|||::.|.::|.|||.|||..|||||.||.::|||||:|.|:||
  Rat   194 RVILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQRSATIVMLTNLKER 258

  Fly  1581 TRIKCDQYWPTRGTETYGQIFVTITETQELATYSIRTF----QL---CRQGFNDRREIKQLQFTA 1638
            ...||.||||.:|..|||.|.|.:.:...|..|:||.|    ||   |:.    .|.:.||.||:
  Rat   259 KEEKCYQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFCIHPQLPDSCKA----PRLVSQLHFTS 319

  Fly  1639 WPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEKIIDIYG 1703
            |||.|||..|...|:||::.:.|.|..:||::|||||||||||.:||||:|::.:..|:.:|::.
  Rat   320 WPDFGVPFTPIGMLKFLKKVKTLNPSHAGPIVVHCSAGVGRTGTFIVIDAMMDMIHSEQKVDVFE 384

  Fly  1704 HVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARNLHTHLQKLLITEPGETISGMEVEF 1768
            .|:.:|.||..||||:.||.||:.|:||..:.|.||:...:|..|||.|..|.......|:|.||
  Rat   385 FVSRIRNQRPQMVQTDVQYTFIYQALLEYYLYGDTELDVSSLERHLQTLHGTATHFDKIGLEEEF 449

  Fly  1769 KKLSNVKMDSSKFVTANLPCNKHKNRLVHILPYESSRVYLTPIHGIEGSDYVNASFIDGYRYRSA 1833
            :||:||::......|.|||.|..|.|::.|:||:.:||.|:...|.|.:||:|||||||||.:..
  Rat   450 RKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEFTDYINASFIDGYRQKDY 514

  Fly  1834 YIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYWPHERSVRYQYYVVDPIAEYN 1898
            ::|.|||:....||||||:||..|..:||||:::|..::||:||||.|.||.:....::..::..
  Rat   515 FMATQGPLAHTVEDFWRMVWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTHGDITIEIKSDTL 579

  Fly  1899 MPQYKLREFKVT-----DARDGSSRTVRQFQFIDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDG 1958
            .....:|:|.||     ..::...|.||||.|..|||.|:|..|:|.||.|..|.|.::|.| :.
  Rat   580 SEAISIRDFLVTFKQPLARQEEQVRMVRQFHFHGWPEVGIPTEGKGMIDLIAAVQKQQQQTG-NH 643

  Fly  1959 PITVHCSAGVGRSGVFITLSIVLERMQYEGVLDVFQTVRILRSQRPAMVQTEDQYHFCYRAALEY 2023
            |||||||||.||:|.||.||.:|||::.||:|||||.|:.||.|||.||||.:||.|||:...::
  Rat   644 PITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDF 708

  Fly  2024 LGSFDNYTN 2032
            :..|.:|.|
  Rat   709 IDIFSDYAN 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495
FN3 <867..1269 CDD:442628
fn3 914..998 CDD:394996
R-PTPc-LAR-1 1498..1735 CDD:350401 119/243 (49%)
R-PTP-LAR-2 1784..2021 CDD:350402 117/241 (49%)
PtpreXP_038964618.1 R-PTPc-E-1 184..412 CDD:350468 112/231 (48%)
PTP_DSP_cys 499..708 CDD:475123 103/209 (49%)
Blue background indicates that the domain is not in the aligned region.

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