DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and ptprc

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_031757198.1 Gene:ptprc / 100493434 XenbaseID:XB-GENE-981257 Length:1005 Species:Xenopus tropicalis


Alignment Length:1009 Identity:285/1009 - (28%)
Similarity:456/1009 - (45%) Gaps:187/1009 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1064 LTESADLVNLEKFAQYAVAIAARFKNGLGRLSEKVTVRI---KPEDVPLNLRA-HDVSTHSMTLS 1124
            |.:|..::.||.:..|:..:...:.|.....::...::.   ||.:|. ||:. |:.|| |:|::
 Frog    50 LRDSRKVIGLEPYTNYSCTVKLIYNNNTEIYNDSKVIKTKAGKPGEVK-NLKCFHNTST-SITIT 112

  Fly  1125 WSPPIRLTP----VNYKISFDAMK-VFV-DSQGFSQTQIVPKREIILKHYVKTHTINELSPFTTY 1183
            |..|  .:|    ..|.:..|:.: ||: |:...|                  :...||..:..|
 Frog   113 WEEP--ESPNGPLPGYIVRNDSTENVFITDTDRLS------------------YNFTELDSYKEY 157

  Fly  1184 NVNVSAI---PSDYSYRPPTKITVTTQMAAPQPMVKPDFYGVVNGEEILVILPQASEEYGPISHY 1245
            .:.|.|:   ...|.:....:|...|.:..|:.:.:.....:.:...|.:......:..||....
 Frog   158 TLFVKAVNNKTDKYLHGKEIEIKCRTDVGKPESIEQSPTVKLTSNNAIEIDCQYPKKMNGPKKEM 222

  Fly  1246 YLVVVPEDKSNLHKIPDQFLTDDLLPGRNKPERPNAPYIAAKFPQRSIPFTFHLGSGDDYHNFTN 1310
            :|....|.|::..||               .:.||..:..                 :|.:..||
 Frog   223 HLNYSGEYKTSFGKI---------------QKHPNCHFRI-----------------EDLNYLTN 255

  Fly  1311 RKLEREKRYRIFVRAVVDTPQKHLYTSSPFS--EF-LSLDMREAPPGERPHRPDPNWPAEPEVSV 1372
                                  :.:..:||:  || ||                      .|||:
 Frog   256 ----------------------YTFKLTPFNGKEFGLS----------------------TEVSI 276

  Fly  1373 NRNKDEPEILWVVLPLMVSTFIVSTALIVLCVVKRRRQPCKTPDQAAVTRPLMAADLGAGPTPSD 1437
            ....::.    .::..:|...|::|..::|.:.|..:....:..|..:. ||:..|         
 Frog   277 KTKYNDK----ALIGFLVFFIIITTLALLLVLFKIYKLQRGSSSQCEIL-PLVNQD--------- 327

  Fly  1438 PVDMRRLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFSQEYESI-EPGQQFTWDNSNLEHNK 1501
              |.::|       ::..|||:.......::..:::.:.|..|::|| ....:|:...:....|:
 Frog   328 --DEKQL-------LNIDPIPVEVLLETYKKKNADEGRLFLDEFQSIPRVFSKFSIKEARKSSNQ 383

  Fly  1502 SKNRYANVTAYDHSRVQLPAVEGVVGSDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWEL 1566
            |||||.::..||.:||.|..::|..|||||||:|.:|:::...|:|.|||..||..|||||.||.
 Frog   384 SKNRYIDILPYDDNRVVLSGIQGEPGSDYINASYVNGFKEPRKYIAAQGPKDETVYDFWRMVWEQ 448

  Fly  1567 KTATIVMMTRLEERTRIKCDQYWPTRGTE--TYGQIFVTITETQELATYSIRTFQLCRQGFNDRR 1629
            |:..|||:||.||..|.||.||||:...|  ||.:|.:.|||.:....|..|...:..:.....|
 Frog   449 KSTIIVMVTRCEEGNRNKCAQYWPSLEDESATYNEIVLKITEEKIFPDYITRKLHINNEKERSER 513

  Fly  1630 EIKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMK 1694
            ::..:|||.||||||||.|...|:..||..||....|||:||||||||||||.|:.||:|||.::
 Frog   514 DVTHIQFTVWPDHGVPDDPNLLLKLRRRVNALNNFFSGPIIVHCSAGVGRTGTYVSIDAMLEGLE 578

  Fly  1695 HEKIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARNLHTHLQKLLITEPGE 1759
            .|..:|:||:|..||.||..|||.|.||||||..::|....|.|||....|...|..|...:|..
 Frog   579 AEGRVDVYGYVVQLRRQRCLMVQVESQYIFIHKCLVEYSQFGETEVSIPELPHSLNNLKSRDPPS 643

  Fly  1760 TISGMEVEFKKL---SNVKMDSSKFVTANLPCNKHKNRLVHILPYESSRVYL------------- 1808
            ..|.:|.||::|   .|.::..:    .|...||..||...::||:.:||.:             
 Frog   644 EPSQLESEFQRLPSYRNWRLQKA----GNDQNNKDLNRNPKVIPYDYNRVQIKLEEEQPNEENEE 704

  Fly  1809 -TPIHGIEG-----SDYVNASFIDGYRYRSAYIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLK 1867
             :.....||     :.|:|||:|.|:....:.||.|||:::...|||:|:::.....:|.|:...
 Frog   705 DSEYSSDEGDTEDATKYINASYIIGFWGTRSVIATQGPLENTVSDFWQMIFQKKVKAIVTLSAPS 769

  Fly  1868 EMGRE-KCFQYWPHERSVRYQYYVVDPIAEYNMPQYKLREFKVTDARDGSSRTVRQFQFIDWPEQ 1931
            :..:| .||.||..::.. ::...|:...|.:...|..|.|::|.::....|||.||.:..|.|:
 Frog   770 QENKEAACFPYWEQKKET-HEDLEVELTNEKSCGSYTERTFQITYSKKTDKRTVCQFHYEQWKEE 833

  Fly  1932 --GVPKSGEGFIDFIGQVHKTKEQF-----------GQDGPITVHCSAGVGRSGVFITLSIVLER 1983
              |.||      :.:..:.|.:::|           .:...:.||||.|..::|.|..|..::|.
 Frog   834 LPGNPK------ELLNMIEKIRKEFPDKRVEEASKHDKSASLVVHCSDGSKKTGTFCALWNLMES 892

  Fly  1984 MQYEGVLDVFQTVRILRSQRPAMVQTEDQYHFCY 2017
            ...|||:||||||:.:|.|||.||.:.:.|.|.|
 Frog   893 AHIEGVIDVFQTVKNIRKQRPGMVSSLEHYQFLY 926

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495
FN3 <867..1269 CDD:442628 42/217 (19%)
fn3 914..998 CDD:394996
R-PTPc-LAR-1 1498..1735 CDD:350401 118/238 (50%)
R-PTP-LAR-2 1784..2021 CDD:350402 78/267 (29%)
ptprcXP_031757198.1 FN3 <56..>278 CDD:442628 54/319 (17%)
FN3 93..167 CDD:238020 23/95 (24%)
R-PTPc-C-1 412..611 CDD:350405 101/198 (51%)
R-PTP-C-2 721..927 CDD:350406 67/213 (31%)
Blue background indicates that the domain is not in the aligned region.

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