DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and ptprg

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_031757104.1 Gene:ptprg / 100488629 XenbaseID:XB-GENE-991516 Length:1411 Species:Xenopus tropicalis


Alignment Length:1314 Identity:364/1314 - (27%)
Similarity:553/1314 - (42%) Gaps:297/1314 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   817 RPTVSLKIMEREPIVSI-ELEWERPAQTYGELR-GYRLRWGVKDQALKEEMLS---GPQMTKKRF 876
            || |.:...:.|...|| ..|.:...::...|| .:|.|..:.|:|:.:..:.   .|.|    .
 Frog   272 RP-VPISYHQLEAFYSIFTTEQQDHVKSVDYLRNNFRPRQSLNDRAVYKSAVKDAWSPDM----M 331

  Fly   877 DNLERGVEYEFRVAGSNHIGIGQETVKIFQTPEGTPGGPPSNITIRFQTPDVLCVTWDPPTREHR 941
            |.|:.              ..|.|..|:..|       ||.|:.:.......|.|||:.|...:.
 Frog   332 DYLDS--------------PFGTEASKVCST-------PPVNMKVHPVNKTALLVTWNQPETIYH 375

  Fly   942 NGII--------TRYD----VQFHKKIDHGLGSERNMTLRKAVFTNLEENTEYIFRVRAYTKQG- 993
            ..:|        |:.|    ..|.|:.|..|         |||..::..:..|:|||:|..:.. 
 Frog   376 PPVISFMVSYSWTKNDEAKEKTFTKENDKDL---------KAVINHVTADILYLFRVQAVCQNDL 431

  Fly   994 AGPFSDKLIVETERD-------MGRAPMSLQAEATSEQTAEI------WWEPVTSRGKLLGYKIF 1045
            ...||..::.:....       :.:..:...:.|:|...|.|      |    ||.|  :.:...
 Frog   432 RSDFSQTMLFQANTTRIFEGTRIVKTGVPTVSPASSADMAPISSGSSTW----TSSG--IPFSFV 490

  Fly  1046 YTMTAVEDLDDWQTKTVGLTESADLVNLEKFAQYAVAIAARFKNGLGRLSEKVTVRIKPEDVPLN 1110
            ...|.:.........||....::.|            :|....:|.|..|...||  .|..:|..
 Frog   491 SMATGMGPSSSGSQATVASVVTSTL------------LAGLGFSGGGLPSFPSTV--WPTRLPTT 541

  Fly  1111 LRAHDVSTHSMTLSWSPPIRLTPVNYKISFDAMKVFV------------------DSQGFSQTQI 1157
            :.:.........:|.:.|:..|..:...|.:..|...                  |.:|..:::.
 Frog   542 VSSTSKQAAKPVVSTTEPLPSTGSDSDASPNKSKEGAEEGEKNENNEGEEGDRDQDEEGEKESEK 606

  Fly  1158 VPKREIILKHYVKTHTINELSPFTTYNVNVSAIPSDYSYRPPTKITVTTQMAAPQPMVKPDFYGV 1222
            ..|........|:.||  |.:|        :|:.:|.........|:|.                
 Frog   607 KEKSSSTRSSEVQNHT--ESTP--------TAVSTDKVAEAGANETITD---------------- 645

  Fly  1223 VNGEEILVILPQASEEYGPISHYYLVVVPEDKSNLHKIPDQFLTDDLLPGRNKPERPNA------ 1281
                                        |....|         |..:.|...||..|.|      
 Frog   646 ----------------------------PRQNGN---------TSLIEPQETKPSTPGATAGPSH 673

  Fly  1282 PYIAAKFPQRSIPFTFHLGSGDDYHNFTNRKLEREKRYRIFVRAVVD-TPQKHLYTSSPFSE--- 1342
            |.:.               |.:||:                    || |...|...|..:||   
 Frog   674 PAVT---------------SIEDYY--------------------VDLTTTMHRSRSKEYSEGDT 703

  Fly  1343 -----FLSLDMREAPPGERPHRPDPN-------WPAEPEVSVNRNKDEPEILWVVLPLMVSTFIV 1395
                 |.:::            |||.       ||...::.           |:: ||:|.:.:.
 Frog   704 EVDIRFFTVN------------PDPQINSSMAMWPHPGKME-----------WII-PLVVVSALT 744

  Fly  1396 STALIVLCVVKRRRQPC-KTP----DQAAVTRPLMAADLGAGPTPSDPVDMRRLNFQTPGMISHP 1455
            ...||:|..|....:.| :|.    :.::..|.:....:...|.|.|                ..
 Frog   745 FVCLILLLAVLVYWRKCFQTAHFYVEDSSSPRVIPNESIPIIPIPDD----------------ME 793

  Fly  1456 PIPISEFANHIERLKSNDNQKFSQEYESIE---PGQQFTWDNSNLEHNKSKNRYANVTAYDHSRV 1517
            .||:.:|..||..|.||:...||:|:|.::   .....|.::||...||.||||.|:.|||||||
 Frog   794 AIPVKQFIKHISELYSNNQHGFSEEFEEVQRCTSDMNITAEHSNHPDNKHKNRYINIVAYDHSRV 858

  Fly  1518 QLPAVEGVVG--SDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEER 1580
            :|..:.|...  ||||||||.|||.|..||:||||||:.||.|||||.||..|..|||:|.|.|:
 Frog   859 KLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEK 923

  Fly  1581 TRIKCDQYWPTRGTETYGQIFVTITETQELATYSIRTFQLCR-----------QGFNDRREIKQL 1634
            .|.||||||||..::.||.|.||:..|:..|.|::|.|.:..           :|.::.|.:.|.
 Frog   924 GRRKCDQYWPTENSDEYGNIMVTLKSTRVYACYTVRKFTIRNMKMKKGQKGNAKGRHNERTVMQY 988

  Fly  1635 QFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEKII 1699
            .:|.|||.|||::..|.|.|:||..|:..||.|||:|||||||||||.||||||||:::|.:..:
 Frog   989 HYTQWPDMGVPEYALPVLTFVRRSSAVQLPEMGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTV 1053

  Fly  1700 DIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARNLHTHLQKLLITEPGETISGM 1764
            :..|.:..:|.||||:||||:||||||||:||||:...|||.|..||:::..:|...||.. :.:
 Frog  1054 NALGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVCANQLHSYVNSILTPGPGGR-TRL 1117

  Fly  1765 EVEFKKLSNVKMDSSKFVTANLPCNKHKNRLVHILPYESSRVYLTPIHGIEGSDYVNASFIDGYR 1829
            |.:|:.::.......:..:|....||.|||...::|.|.:||.|.|:.|::|:||:|||:|.||.
 Frog  1118 EKQFRLVTQCNAKYVECFSAQKDSNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYL 1182

  Fly  1830 YRSAYIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYWP-HERSVRYQYYVV-- 1891
            ..:.:|..|.|:....:|||||:|:||:.|:|||...:.:..:: |.||| .|.|:..:.:.|  
 Frog  1183 RSNEFIITQHPMPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDE-FVYWPSREESMNCEAFTVTL 1246

  Fly  1892 ---DPIAEYNMPQYKLREFKVTDARDGSSRTVRQFQFIDWPEQGVPKSGEGFIDFIGQVHKTKEQ 1953
               |.:...|..|..:.:|.:...:|.....||.||...||....|.|..  .:.|..:  .:|.
 Frog  1247 ISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISSA--FELINVI--KEEA 1307

  Fly  1954 FGQDGPITVHCSAGVGRSGVFITLSIVLERMQYEGVLDVFQTVRILRSQRPAMVQTEDQYHFCYR 2018
            ..:|||..||...|...:|....|:.:.::|:.|..:||:|..:::...||.:....:.|.|.|:
 Frog  1308 LTRDGPTIVHDEFGAVSAGTLCALATLSQQMENENAVDVYQVAKMINLMRPGVFTDIEHYQFLYK 1372

  Fly  2019 AALEYLGSFDNYTN 2032
            |.|..:.:.:|.||
 Frog  1373 AMLSLISTKENGTN 1386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495 13/70 (19%)
FN3 <867..1269 CDD:442628 73/448 (16%)
fn3 914..998 CDD:394996 23/96 (24%)
R-PTPc-LAR-1 1498..1735 CDD:350401 134/249 (54%)
R-PTP-LAR-2 1784..2021 CDD:350402 78/242 (32%)
ptprgXP_031757104.1 alpha_CARP_receptor_like 67..319 CDD:239396 13/47 (28%)
FN3 349..426 CDD:214495 22/85 (26%)
R-PTPc-G-1 815..1088 CDD:350505 140/272 (51%)
R-PTP-G-2 1172..1376 CDD:350508 63/208 (30%)
Blue background indicates that the domain is not in the aligned region.

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