DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and ptprd

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_031751329.1 Gene:ptprd / 100145434 XenbaseID:XB-GENE-478374 Length:1940 Species:Xenopus tropicalis


Alignment Length:2110 Identity:994/2110 - (47%)
Similarity:1308/2110 - (61%) Gaps:264/2110 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 MTAARPIAALSLLVLSLLTWTHPTIVDAAHPPEIIRKPQNQ-GVRVGGVASFYCAARGDPPPSIV 68
            |..|||:..|...:|.         ..|..||::.|.|.:| ||. ||||||.|.|.|||.|.||
 Frog     9 MNIARPVVVLLCFLLH---------AGAETPPKLTRTPVDQIGVS-GGVASFICQATGDPRPKIV 63

  Fly    69 WRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGD 133
            |.|.|||||..:....:....|..|:|||:|:|..||:|.|||||.|.||: |:....||:...|
 Frog    64 WNKKGKKVSNQRFEVVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNSVGE-VATTTRLTVLRED 127

  Fly   134 KTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD------- 191
            :.|.|||.|..||..:|:|...|..|.|.|.|||.|.|.|.|:...||.||....:|.       
 Frog   128 QIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDYLPVDTSNNNGRIKQLRSESIG 192

  Fly   192 -----GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK----VRRVPPTFSRPPETISEVM 247
                 |.||||.|.|.|||||||||.||.||.:|...||||:    |||:.|.||.|| |..|:|
 Frog   193 GTPIRGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRELREVRRIAPRFSIPP-TNHEIM 256

  Fly   248 LGSNLNLSCIAVGSPMPHVKWMKGSEDLTPENEMPIGRNVLQLINIQESANYTCIAASTLGQIDS 312
            .|.::|::|:|||||||:||||.||||||||::||||||||:|.::::||||||:|.||||.|::
 Frog   257 PGGSVNITCVAVGSPMPYVKWMLGSEDLTPEDDMPIGRNVLELTDVRQSANYTCVAMSTLGVIEA 321

  Fly   313 VSVVKVQSLPTAPTDVQISEVTATSVRLEWSYKGPEDLQYYVIQYKPKNANQAFSEISGIITMYY 377
            ::.:.|::||..|....::|.||||:.|.|....||.:.||:||:|||::.:.:.||.|:.|..|
 Frog   322 IAQINVKALPKPPGTPMVTESTATSITLTWDSGNPEPVSYYIIQHKPKSSEEQYKEIDGVATTRY 386

  Fly   378 VVRALSPYTEYEFYVIAVNNIGRGPPSAPATCTTGDFSFGGTKMESAPRNVQVRTLSSSTMVITW 442
            .|..||||:||||.|:|||||||||||.|....|.:     ....|.|||||.|.|||:|:::.|
 Frog   387 SVAGLSPYSEYEFRVVAVNNIGRGPPSEPVMTRTSE-----QAPSSPPRNVQARMLSSTTILVQW 446

  Fly   443 EPPETPNGQVTGYKVYYTTNSNQPEASWNSQMVDNSELTTVSELTPHAIYTVRVQAYTSMGAGPM 507
            |.||.||||:.||:||||.:..|...||....|.:|::||:..|.|...|:|:|.|:||:|.||:
 Frog   447 EEPEEPNGQIQGYRVYYTMDPTQHINSWTKHNVADSQITTIGNLEPQKTYSVKVLAFTSVGDGPL 511

  Fly   508 STPVQVKAQQGVPSQPSNFRATDIGETAVTLQWTKPTHSSENIVHYELYWNDTYANQAHHKRISN 572
            |..:||..|.||||||.||:|....||::.|.||.|  .|:.|..|:||:.:....:.....|..
 Frog   512 SNDIQVITQTGVPSQPLNFKAEPESETSILLSWTPP--RSDTISSYDLYYKEGDHAEEQVITIDP 574

  Fly   573 SEAYTLDGLYPDTLYYIWLAARSQRGEGATTPPIPVRTKQY--GAPPRNITAIATSSTTISLSWL 635
            :.:|.|.||.|::|||..||||:|.|.||:|..|..||.|.  .|||::|...:.|||:|.:|||
 Frog   575 ATSYRLQGLKPNSLYYFRLAARAQVGLGASTAEISARTMQSKPSAPPQDIRCNSQSSTSILVSWL 639

  Fly   636 PPPVERSNGRIIYYKVFFVEVGRED---DEATTMTLNMTSIVLDELKRWTEYKIWVLAGTSVGDG 697
            |||||:.||:|:.|.:.:..|..:|   .|..:::......:|::|::||:|:|.::|.|.||.|
 Frog   640 PPPVEKQNGKIMGYSIKYTGVDTDDAKSHEILSISSETRQYLLEQLEKWTQYRIIMIAYTDVGPG 704

  Fly   698 PRSHPIILRTQEDVP-GDPQDVKATPLNSTSIHVSWKPPLEKDRNGIIRGYHIHAQELRD-EGKG 760
            |.|.||::||.|||| |.|:.|:...:||||:.|||:.|:...::|.||||.:|...:.: |.||
 Frog   705 PESSPILIRTDEDVPSGPPRKVEVEAVNSTSVKVSWRSPVANKQHGQIRGYQVHYVRMENGEPKG 769

  Fly   761 FLNEPFKFDVV---------DTLEFN--VTGLQPDTKYSIQVAALTRKGDGDRSAAIVVKTPGGV 814
               :|...||:         ||.|..  ::||||:|.|||.|.|.|.||||.||...:|.|...|
 Frog   770 ---QPMLKDVMLADAQWEYDDTTEHEMIISGLQPETAYSITVTAYTTKGDGARSKPKIVSTSAAV 831

  Fly   815 PVRPTVSLKIMEREPIVSIELEWERPAQTYGELRGYRLRWGVKDQALKEEMLSGPQMTKKR---- 875
            |.:|.:   ::....:.:..::|..|.:|:|.:.||||::|.||.    :.|:..:.::|.    
 Frog   832 PGKPRL---VISHTQMNTALIQWYPPVETFGPVIGYRLKFGRKDL----DTLTTLEFSEKEEHFT 889

  Fly   876 FDNLERGVEYEFRVAGSNHIGIGQETVKIFQTPEGTPGGPPSNITIRFQTPDVLCVTWDPPTREH 940
            ..::.:|..|.|:::..|.:|.|:|.||....||..|.|.|.||.....:...:.:||..|..|.
 Frog   890 ATDIHKGALYIFKLSARNKVGYGEEIVKELSIPEEPPSGFPQNIHCDSTSSTSVLITWQHPNLEE 954

  Fly   941 RNGIITRYDVQF------HKKIDHGL-GSERNMTLRKAVFTNLEENTEYIFRVRAYTKQGAGPFS 998
            |||::|:|.:.:      |..|:..: .::..:||     |.|:.:|.|..::||:|.:|.||||
 Frog   955 RNGLLTKYTLMYRDINLPHYPIEVPIVPADTTVTL-----TGLKPDTTYDVKLRAHTSKGPGPFS 1014

  Fly   999 DKLIVET-ERDMGRAPMSLQAEATSEQTAEIWWEPVTSRGKLLGYKIFYTMTAVEDLDDWQTKTV 1062
            ..:...| ..|......:...:|..:.:..:.||...:....|.:||.|        ||      
 Frog  1015 PSVQFRTLPVDQAVFAKNFHVKAVMKTSVLLSWEIPENYNSALPFKILY--------DD------ 1065

  Fly  1063 GLTESADLVNLEKFAQYAVAIAARFKNGLGRLSEKVTVRIKPEDVPLNLRAHDVSTHSMTLSWSP 1127
                          .:.|:.:.       ||.::|:...:|||           :::|..|:   
 Frog  1066 --------------GKMAMEVD-------GRATQKLITNLKPE-----------TSYSFVLT--- 1095

  Fly  1128 PIRLTPVNYKISFDAMKVFVDSQGFSQTQIVPKREIILKHYVKTHTINELSPFTTYNVNVSAIPS 1192
                                 ::|.|...        |:|.|                       
 Frog  1096 ---------------------NRGNSAGG--------LQHRV----------------------- 1108

  Fly  1193 DYSYRPPTKITVTTQMAAPQPM-VKPDFYGVVNGEEILVI-LPQ--ASEEYGPISHYYLVVVPED 1253
                         |...||..: .||.|.|..|.:.::.: ||:  |::.   |..||:|:||..
 Frog  1109 -------------TAKTAPDVLKTKPVFIGKTNSDGMITVELPEVLANDR---IKGYYIVIVPLK 1157

  Fly  1254 KSNLHKI-----PDQFLTDDLLPG--------RNKPERPNAPYIAAKFPQRSIPFTFHLGSGDDY 1305
            ||....|     ||:...||||..        |.:.|....|||||.|.  .:|..|.||....|
 Frog  1158 KSRGKFIKPWESPDEMELDDLLKEISRKRRSLRFRREAEQKPYIAAHFD--VLPTEFTLGDQKQY 1220

  Fly  1306 HNFTNRKLEREKRYRIFVRAVVDTPQKHLYTSSPFSE-FLSLDMREAPPGERPHRPDPNWPAEPE 1369
            ..|.|::|:..:.|..||.||::..:..::.:||:|: .:|:::            ||. |...|
 Frog  1221 GGFENKQLQNGQEYVFFVLAVIEHSESTMFATSPYSDPVVSMEI------------DPQ-PITDE 1272

  Fly  1370 VSVNRNKDEPEILWVVLPLMVSTFIVSTALIVLCVVKRRRQPCKTPDQAAVTRPLMAADLGAG-- 1432
                    |..::|||.|::...||:...:.:|.....:      ||:.........:.|...  
 Frog  1273 --------EEGLIWVVGPVLAVVFIICIVIAILLYKSSK------PDRKRTESDSRKSSLPNSKE 1323

  Fly  1433 -PT--PSDPVDMRRLNFQTPG--------------MISHPPIPISEFANHIERLKSNDNQKFSQE 1480
             |:  |:|||::|||||||||              |.:||||||.|.|:||||||:|||.|||||
 Frog  1324 IPSHHPTDPVELRRLNFQTPGSGVSGYPRNLHSSSMANHPPIPILELADHIERLKANDNLKFSQE 1388

  Fly  1481 YESIEPGQQFTWDNSNLEHNKSKNRYANVTAYDHSRVQLPAVEGVVGSDYINANYCDGYRKHNAY 1545
            ||||:|||||||::||||.||.|||||||.|||||||.|.|:||:.||||||:||.|||||.|||
 Frog  1389 YESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYINSNYIDGYRKQNAY 1453

  Fly  1546 VATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTITETQEL 1610
            :||||||.|||.|||||.||.:||||||||:||||:|||||||||:|||||||.|.:|:.:|.||
 Frog  1454 IATQGPLPETFGDFWRMMWEQRTATIVMMTKLEERSRIKCDQYWPSRGTETYGLIQITLLDTVEL 1518

  Fly  1611 ATYSIRTFQLCRQGFNDRREIKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSA 1675
            |||::|||.|.:.|.:::||::|.|||||||||||:||.|||.||||.:...||::||::|||||
 Frog  1519 ATYTVRTFALYKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVHCSA 1583

  Fly  1676 GVGRTGCYIVIDSMLERMKHEKIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEV 1740
            |||||||:||||:||||::|||.:|||||||.:||||||||||||||||||||:|||:.||.|||
 Frog  1584 GVGRTGCFIVIDAMLERIRHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTEV 1648

  Fly  1741 PARNLHTHLQKLLITEPGETISGMEVEFKKLSNVKMDSSKFVTANLPCNKHKNRLVHILPYESSR 1805
            |||||:.::|||...|.||.::|||:|||:|::.|..:|:|::|||||||.|||||:|:||||:|
 Frog  1649 PARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRLVNIMPYESTR 1713

  Fly  1806 VYLTPIHGIEGSDYVNASFIDGYRYRSAYIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMG 1870
            |.|.||.|:|||||:|||||||||.:.||||.|||:.:..|||||||||||||||||||||:|||
 Frog  1714 VCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMG 1778

  Fly  1871 REKCFQYWPHERSVRYQYYVVDPIAEYNMPQYKLREFKVTDARDGSSRTVRQFQFIDWPEQGVPK 1935
            ||||.||||.|||.||||:||||:||||||||.||||||||||||.|||||||||.|||||||||
 Frog  1779 REKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPK 1843

  Fly  1936 SGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRSGVFITLSIVLERMQYEGVLDVFQTVRILR 2000
            |||||||||||||||||||||||||:|||||||||:|||||||||||||:||||:|:||||::||
 Frog  1844 SGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLR 1908

  Fly  2001 SQRPAMVQTEDQYHFCYRAALEYLGSFDNY 2030
            :||||:|||||||.|||||.||||||||:|
 Frog  1909 TQRPAVVQTEDQYQFCYRAGLEYLGSFDHY 1938

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151 47/93 (51%)
Ig strand B 53..57 CDD:409353 3/3 (100%)
Ig strand C 66..70 CDD:409353 2/3 (67%)
Ig strand E 93..97 CDD:409353 2/3 (67%)
Ig strand F 108..113 CDD:409353 3/4 (75%)
Ig strand G 122..125 CDD:409353 0/2 (0%)
Ig 141..228 CDD:472250 45/98 (46%)
Ig strand B 157..161 CDD:409353 1/3 (33%)
Ig strand C 170..174 CDD:409353 1/3 (33%)
Ig strand E 192..196 CDD:409353 2/3 (67%)
Ig strand F 206..211 CDD:409353 4/4 (100%)
Ig strand G 218..221 CDD:409353 0/2 (0%)
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401 49/81 (60%)
Ig strand A 237..239 CDD:409401 1/1 (100%)
Ig strand A' 244..248 CDD:409401 1/3 (33%)
Ig strand B 251..259 CDD:409401 2/7 (29%)
Ig strand C 264..270 CDD:409401 4/5 (80%)
Ig strand C' 272..274 CDD:409401 1/1 (100%)
Ig strand D 277..281 CDD:409401 2/3 (67%)
Ig strand E 286..291 CDD:409401 3/4 (75%)
Ig strand F 298..305 CDD:409401 5/6 (83%)
Ig strand G 309..318 CDD:409401 1/8 (13%)
FN3 322..411 CDD:238020 45/88 (51%)
FN3 <382..747 CDD:442628 169/370 (46%)
FN3 712..810 CDD:238020 45/110 (41%)
FN3 832..898 CDD:214495 18/69 (26%)
FN3 <867..1269 CDD:442628 90/422 (21%)
fn3 914..998 CDD:394996 27/90 (30%)
R-PTPc-LAR-1 1498..1735 CDD:350401 174/236 (74%)
R-PTP-LAR-2 1784..2021 CDD:350402 199/236 (84%)
ptprdXP_031751329.1 I-set 31..123 CDD:400151 47/93 (51%)
Ig strand B 48..52 CDD:409353 3/3 (100%)
Ig strand C 61..65 CDD:409353 2/3 (67%)
Ig strand E 85..92 CDD:409353 3/6 (50%)
Ig strand F 103..108 CDD:409353 3/4 (75%)
Ig strand G 116..119 CDD:409353 0/2 (0%)
IgI_2_RPTP_IIa_LAR_like 135..234 CDD:409400 45/98 (46%)
Ig strand A 135..137 CDD:409400 0/1 (0%)
Ig strand A' 142..146 CDD:409400 1/3 (33%)
Ig strand B 149..158 CDD:409400 3/8 (38%)
Ig strand C 163..169 CDD:409400 3/5 (60%)
Ig strand C' 171..173 CDD:409400 0/1 (0%)
Ig strand D 182..186 CDD:409400 1/3 (33%)
Ig strand E 198..203 CDD:409400 3/4 (75%)
Ig strand F 212..219 CDD:409400 6/6 (100%)
Ig strand G 222..233 CDD:409400 5/10 (50%)
IgI_3_RPTP_IIa_LAR_like 247..328 CDD:409401 49/81 (60%)
Ig strand A 247..249 CDD:409401 1/1 (100%)
Ig strand A' 253..257 CDD:409401 1/3 (33%)
Ig strand B 260..268 CDD:409401 2/7 (29%)
Ig strand C 273..279 CDD:409401 4/5 (80%)
Ig strand C' 281..283 CDD:409401 1/1 (100%)
Ig strand D 286..290 CDD:409401 2/3 (67%)
Ig strand E 295..300 CDD:409401 3/4 (75%)
Ig strand F 307..314 CDD:409401 5/6 (83%)
FN3 312..>746 CDD:442628 198/440 (45%)
Ig strand G 318..327 CDD:409401 1/8 (13%)
FN3 721..827 CDD:238020 44/108 (41%)
FN3 <797..1135 CDD:442628 109/463 (24%)
FN3 930..1021 CDD:238020 28/95 (29%)
R-PTPc-D-1 1362..1645 CDD:350472 211/282 (75%)
R-PTP-D-2 1646..1937 CDD:350476 230/290 (79%)

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