DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and il12rb2

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_001106977.1 Gene:il12rb2 / 100134971 ZFINID:ZDB-GENE-080107-3 Length:792 Species:Danio rerio


Alignment Length:641 Identity:132/641 - (20%)
Similarity:225/641 - (35%) Gaps:180/641 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 TISEVMLGSNLNLSCIAVGSPMPHVKWM-KGSE----DLTP-----------------------E 278
            |..||:||||..:|||   ...|..|.: :.:|    :|:|                       :
Zfish    14 TGKEVLLGSNFTVSCI---FNKPCTKQLFRNNEPIKYELSPRSREVFVYIRNLTTLSIFTCKCND 75

  Fly   279 NEMPIGRNVLQLINIQESANYTCIAASTLGQIDSVSVVKVQSLPTAPTDVQISEVTATSVRLEWS 343
            |..|.|.::..........|.|||..:..|.:....        |...|.:|  ||...:|    
Zfish    76 NPEPCGIDITPGYPPNFPQNLTCIRKTEFGNVSCTW--------TTGRDTKI--VTTCQLR---- 126

  Fly   344 YKGPEDLQYYVIQYKPKNANQAFSEISGIITMYYVVRALSPYTEYEFYVIAVNNIGRG---PPSA 405
                       :|..|.:..::....||.....:.::  |..::....:...|::|..   .||.
Zfish   127 -----------VQGDPHHGYESVMNSSGFCWATFPIK--SRMSQLTVSLNVSNSLGSNTSVQPSL 178

  Fly   406 PATCTTGDFSFGGTKMESAPRNVQVRTLSSSTMVITWEPPETPNGQVTGYKVYYTTNSNQPEASW 470
            |                      :::.:..|:   .|....|.|..:...:|.|    ..|:..|
Zfish   179 P----------------------KIKHVDCSS---RWCHLHTDNHSMNLVEVQY----KSPKGIW 214

  Fly   471 NSQMVDNSELTTVSELTPHAIYTVRVQAYTSMGAGPMSTPVQVK---AQQGVPSQPSNFRATDIG 532
            ....::..:...:|.|.|:..|..:::...:...|..|...|.|   .::..|.:..:|      
Zfish   215 KKVQINGKKSLNISLLEPYTKYMFQIRRKINQTMGLWSYWSQAKEAETKEEAPDKVLDF------ 273

  Fly   533 ETAVTLQW----TKPTHSSENIVHYELYWNDTYANQAHHKRISNSEAYTLDGLYPDTLYYIWLAA 593
                   |    .||:.|.:   .:.::|          |.:|.|:|......|..|:       
Zfish   274 -------WYLRELKPSQSEK---CFRIFW----------KELSVSDAKGKIHQYDITV------- 311

  Fly   594 RSQRGEGATTPPIPVRTKQ----------------YGAPPRNITAIAT-------------SSTT 629
              ::|.......:|.|..:                .|..|.|...:.|             |:.:
Zfish   312 --KKGNSREIIVVPRRINESICCSDCSVSVSAVNSMGQSPENFIKLQTPHLVSGFLSHKSLSNHS 374

  Fly   630 ISLSWLPPPVERSNGRIIYYKVFFVEVGREDDEATTMTLNMTSIVLDELKRWTEYKIWVLAGTSV 694
            |:|||   |.....|.|..|.|.:..|| :.:|...:.:..|...:..|:....::..|.|.|| 
Zfish   375 IALSW---PRLAIAGNITEYVVHWYPVG-DIEEIQWIRVVDTKANITGLRPQECFQGAVTALTS- 434

  Fly   695 GDGPRSHPIILRTQEDVPGD---PQDVKATPLNSTSIHVSW-KPPLEKDRNGIIRGYHIHAQELR 755
             :||.:....|.|.:..|..   ||.||.   .:.|:.|.| |.|.|| |.|.::.|.::   |.
Zfish   435 -NGPVASNKDLSTWQSAPEQGPVPQQVKK---KTESLIVKWSKIPQEK-RGGCLKKYTVY---LM 491

  Fly   756 DEGKGFLNEPFKFDVVDTLEFNVTGLQPDTKYSIQVAALTRKGDGDRSAAIVVKTP 811
            |:.||.::. :..|...| |:.::||.|...|::.|.|.|..|:|.|.:.:...||
Zfish   492 DKSKGEIHH-YSVDYPLT-EYIISGLSPGQCYNLWVTAWTDAGEGPRGSDLPFCTP 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352 23/103 (22%)
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216 19/95 (20%)
fn3 324..404 CDD:278470 12/82 (15%)
FN3 423..514 CDD:238020 15/90 (17%)
FN3 520..610 CDD:238020 15/93 (16%)
FN3 616..707 CDD:238020 25/103 (24%)
FN3 712..810 CDD:238020 32/101 (32%)
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550
PTPc 1503..1731 CDD:238006
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
il12rb2NP_001106977.1 FN3 93..173 CDD:304408 18/106 (17%)
fn3 368..436 CDD:278470 19/73 (26%)
FN3 466..544 CDD:238020 27/83 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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