DRSC/TRiP Functional Genomics Resources

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Protein Alignment PCNA2 and pcn1

DIOPT Version :9

Sequence 1:NP_609994.1 Gene:PCNA2 / 35257 FlyBaseID:FBgn0032813 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_596504.1 Gene:pcn1 / 2540020 PomBaseID:SPBC16D10.09 Length:260 Species:Schizosaccharomyces pombe


Alignment Length:259 Identity:124/259 - (47%)
Similarity:184/259 - (71%) Gaps:6/259 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLEARLSQTLLLKKIVDALKEIIAQGTLDCSENGLELQSMDNSHVSLVALSLASDCFEKFHCDRN 65
            |||||..|..||||::||:||::.....||::||:.||:||:|||:||::.:.||.||.:.||||
pombe     1 MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQAMDSSHVALVSMLIKSDGFEPYRCDRN 65

  Fly    66 VSLGLDLKSLGKVLKCANSDDAVTIKAVDRPEKITLSFESDGKERTADYELKLLNLDQDHMEIPK 130
            ::||::|.:|.|||:||.::|.||:||.|.||.:.|.|||:..:|.:||::||:::||:|:.||.
pombe    66 IALGINLNALSKVLRCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMDIDQEHLGIPD 130

  Fly   131 KDYTCFIQLPSSEFARICRDMSMFDESLTIACSSKGIRFLAKGDLGTANIQLSAGTAM---DVSI 192
            .:|...|.:|::||.||.||:....:|:||..|.:|:||..|||:|..:..|...|.:   |.||
pombe   131 IEYDATITMPAAEFQRITRDLLTLSDSVTINASKEGVRFSCKGDIGNGSTTLKQHTDLSDQDQSI 195

  Fly   193 EVQ--EPVTQSFAGRYLNTFTKATPLADRVKLYLSDERPLLVEYPIEDYGHIRYYLAPKVNDPD 254
            |:.  :.||.:|:.:||..||||||||.||.|.:|::.||||||.:|. |.:|:|||||:.:.|
pombe   196 EISLTQAVTLTFSLKYLAQFTKATPLATRVTLSMSNDVPLLVEYKMES-GFLRFYLAPKIGEED 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCNA2NP_609994.1 pcna 1..254 CDD:273158 123/257 (48%)
pcn1NP_596504.1 pcna 1..258 CDD:273158 123/257 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 126 1.000 Domainoid score I1379
eggNOG 1 0.900 - - E1_COG0592
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 291 1.000 Inparanoid score I633
OMA 1 1.010 - - QHG62193
OrthoFinder 1 1.000 - - FOG0003572
OrthoInspector 1 1.000 - - otm47141
orthoMCL 1 0.900 - - OOG6_100882
Panther 1 1.100 - - O PTHR11352
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2443
TreeFam 1 0.960 - -
1211.830

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