DRSC/TRiP Functional Genomics Resources

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Protein Alignment ref(2)P and Mib2

DIOPT Version :10

Sequence 1:NP_476700.1 Gene:ref(2)P / 35246 FlyBaseID:FBgn0003231 Length:599 Species:Drosophila melanogaster
Sequence 2:XP_006539310.1 Gene:Mib2 / 76580 MGIID:2679684 Length:982 Species:Mus musculus


Alignment Length:562 Identity:104/562 - (18%)
Similarity:172/562 - (30%) Gaps:177/562 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 HDAVECDGCGLAPLIGFRYKCVQCSNYDLCQKCELAHKH--------------------PEHLML 166
            |..:.||.|....|.|.|:||..|.:||||.:|.:.:||                    |...:.
Mouse    86 HPNIICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKHDLTHAFERYETSHSRPVTLSPRQGLP 150

  Fly   167 RMPTN---------NGPGMVDAWFTGPGLGRRSGR------------RSRGHCPFQE-TNQADPA 209
            |:|..         .||..  .|.:..|...::||            ||.....:.: |......
Mouse   151 RIPLRGIFQGAKVVRGPDW--EWGSQDGGEGKTGRVVDIRGWDVETGRSVASVTWADGTTNVYRV 213

  Fly   210 GEPARDSRRERRQA------RRHAGVLTQFVEMMTNLPLNTTTATAPAEP----QKPKAAEQTE- 263
            |...:...|...:|      :.|...|.:..|:...:       :|..:|    .|.|....|: 
Mouse   214 GHKGKVDLRCVGEAAGGFYYKEHLPKLGKPAELQRRV-------SADGQPFQRGDKVKCLLDTDV 271

  Fly   264 -----------SPPQAEPTVTAEKAAESEAKPTEPKKVNTDQSVPRTEDP-VTTPRSTQPTTPVI 316
                       :|..||  ...:.............:|..:.....|..| ..|..::.....|:
Mouse   272 LRDMQEGHGGWNPRMAE--FIGQMGTVHRITDRGDVRVQFNHETRWTFHPGALTKHNSFWVGDVV 334

  Fly   317 ----NLDNISQI----------VPPEYMSAGIEILNNFSEMFSKIIDTTEGGDSGIFAPSTTPSA 367
                :||.:.::          :.|.....| :::..|.:...::   ..||....|:||...: 
Mouse   335 RVIGDLDTVKRLQAGHGEWTDDMAPALGRVG-KVVKVFGDGNLRV---AVGGQRWTFSPSCLVA- 394

  Fly   368 ENKKPEEQGQSSGQSGASSANQSAVPSAAPSANQSNVPSANQSATPSISGSIPDAQLETEPLNPK 432
              .:|||.........|.. |:||...:.....|.       |..|:::.::|...|        
Mouse   395 --YRPEEDANLDVAERARE-NKSAASVSVAGGRQG-------SPWPALTSTLPPGSL-------- 441

  Fly   433 PSETTTETEQERRRSDSLDPE--WQLIDNAYSANNSNLINLDTTNPTAAPQEPVRDFGQLGELLR 495
                  ....::.|:...|||  .:|:..|...|.:..:                      :|||
Mouse   442 ------SVALDKLRTQKSDPEHPGRLVVEAALGNVARAL----------------------DLLR 478

  Fly   496 QHMNEEARVEQASANTQTA----QVDTVSTSTSTTSVTTNSVGTSPAAPDDKRTVPVYHTDESIN 556
            :|..:.....|.....|.|    ||:.|.......:        |...|||:....:::|     
Mouse   479 RHPEQVDTKNQGRTALQVAAYLGQVELVRLLLQARA--------SMDLPDDEGNTVLHYT----- 530

  Fly   557 KSIHAMMAMGFSNEGAWLTQLLESV-------QGNISAALDV 591
                   |||...|.   |::|.|.       .|..|.||.|
Mouse   531 -------AMGNQPEA---TRVLLSAGCAVDARNGTRSTALHV 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ref(2)PNP_476700.1 PB1 6..88 CDD:413452
ZZ 121..165 CDD:395451 18/62 (29%)
UBA_SQSTM 555..593 CDD:270505 12/44 (27%)
Mib2XP_006539310.1 MIB_HERC2 12..78 CDD:461991
ZZ_Mind_bomb 89..133 CDD:239079 16/43 (37%)
MIB_HERC2 160..224 CDD:461991 11/65 (17%)
SH3_15 257..322 CDD:465720 9/66 (14%)
SH3_15 328..392 CDD:465720 11/67 (16%)
ANKYR 441..730 CDD:440430 35/181 (19%)
ANK repeat 490..520 CDD:293786 6/37 (16%)
ANK repeat 522..553 CDD:293786 8/45 (18%)
ANK repeat 555..586 CDD:293786 4/8 (50%)
ANK repeat 588..622 CDD:293786
ANK repeat 625..656 CDD:293786
ANK repeat 658..690 CDD:293786
ANK repeat 692..723 CDD:293786
RING-HC_MIB2_rpt1 857..894 CDD:438386
RING_Ubox 932..982 CDD:473075
Blue background indicates that the domain is not in the aligned region.

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