DRSC/TRiP Functional Genomics Resources

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Protein Alignment ref(2)P and Mib2

DIOPT Version :9

Sequence 1:NP_001014491.1 Gene:ref(2)P / 35246 FlyBaseID:FBgn0003231 Length:599 Species:Drosophila melanogaster
Sequence 2:XP_006539310.1 Gene:Mib2 / 76580 MGIID:2679684 Length:982 Species:Mus musculus


Alignment Length:562 Identity:104/562 - (18%)
Similarity:172/562 - (30%) Gaps:177/562 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 HDAVECDGCGLAPLIGFRYKCVQCSNYDLCQKCELAHKH--------------------PEHLML 166
            |..:.||.|....|.|.|:||..|.:||||.:|.:.:||                    |...:.
Mouse    86 HPNIICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKHDLTHAFERYETSHSRPVTLSPRQGLP 150

  Fly   167 RMPTN---------NGPGMVDAWFTGPGLGRRSGR------------RSRGHCPFQE-TNQADPA 209
            |:|..         .||..  .|.:..|...::||            ||.....:.: |......
Mouse   151 RIPLRGIFQGAKVVRGPDW--EWGSQDGGEGKTGRVVDIRGWDVETGRSVASVTWADGTTNVYRV 213

  Fly   210 GEPARDSRRERRQA------RRHAGVLTQFVEMMTNLPLNTTTATAPAEP----QKPKAAEQTE- 263
            |...:...|...:|      :.|...|.:..|:...:       :|..:|    .|.|....|: 
Mouse   214 GHKGKVDLRCVGEAAGGFYYKEHLPKLGKPAELQRRV-------SADGQPFQRGDKVKCLLDTDV 271

  Fly   264 -----------SPPQAEPTVTAEKAAESEAKPTEPKKVNTDQSVPRTEDP-VTTPRSTQPTTPVI 316
                       :|..||  ...:.............:|..:.....|..| ..|..::.....|:
Mouse   272 LRDMQEGHGGWNPRMAE--FIGQMGTVHRITDRGDVRVQFNHETRWTFHPGALTKHNSFWVGDVV 334

  Fly   317 ----NLDNISQI----------VPPEYMSAGIEILNNFSEMFSKIIDTTEGGDSGIFAPSTTPSA 367
                :||.:.::          :.|.....| :::..|.:...::   ..||....|:||...: 
Mouse   335 RVIGDLDTVKRLQAGHGEWTDDMAPALGRVG-KVVKVFGDGNLRV---AVGGQRWTFSPSCLVA- 394

  Fly   368 ENKKPEEQGQSSGQSGASSANQSAVPSAAPSANQSNVPSANQSATPSISGSIPDAQLETEPLNPK 432
              .:|||.........|.. |:||...:.....|.       |..|:::.::|...|        
Mouse   395 --YRPEEDANLDVAERARE-NKSAASVSVAGGRQG-------SPWPALTSTLPPGSL-------- 441

  Fly   433 PSETTTETEQERRRSDSLDPE--WQLIDNAYSANNSNLINLDTTNPTAAPQEPVRDFGQLGELLR 495
                  ....::.|:...|||  .:|:..|...|.:..:                      :|||
Mouse   442 ------SVALDKLRTQKSDPEHPGRLVVEAALGNVARAL----------------------DLLR 478

  Fly   496 QHMNEEARVEQASANTQTA----QVDTVSTSTSTTSVTTNSVGTSPAAPDDKRTVPVYHTDESIN 556
            :|..:.....|.....|.|    ||:.|.......:        |...|||:....:::|     
Mouse   479 RHPEQVDTKNQGRTALQVAAYLGQVELVRLLLQARA--------SMDLPDDEGNTVLHYT----- 530

  Fly   557 KSIHAMMAMGFSNEGAWLTQLLESV-------QGNISAALDV 591
                   |||...|.   |::|.|.       .|..|.||.|
Mouse   531 -------AMGNQPEA---TRVLLSAGCAVDARNGTRSTALHV 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ref(2)PNP_001014491.1 PB1 6..88 CDD:295447
ZZ 121..165 CDD:278966 18/62 (29%)
UBA_SQSTM 555..593 CDD:270505 12/44 (27%)
Mib2XP_006539310.1 MIB_HERC2 12..77 CDD:369043
ZZ_Mind_bomb 89..133 CDD:239079 16/43 (37%)
MIB_HERC2 160..224 CDD:369043 11/65 (17%)
SH3_15 257..322 CDD:375773 9/66 (14%)
SH3_15 328..392 CDD:375773 11/67 (16%)
PLN03192 <453..517 CDD:215625 17/93 (18%)
PHA03095 486..>737 CDD:222980 23/100 (23%)
ANK repeat 490..520 CDD:293786 6/37 (16%)
ANK repeat 522..553 CDD:293786 8/45 (18%)
ANK repeat 555..586 CDD:293786 4/8 (50%)
ANK repeat 588..622 CDD:293786
ANK repeat 625..656 CDD:293786
ANK repeat 658..690 CDD:293786
ANK repeat 692..723 CDD:293786
RING1-HC_MIB2 858..894 CDD:319640
RING_Ubox 937..982 CDD:388418
RING-HC finger (C3HC4-type) 938..970 CDD:319361
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4582
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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