DRSC/TRiP Functional Genomics Resources

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Protein Alignment ref(2)P and sqst-5

DIOPT Version :10

Sequence 1:NP_476700.1 Gene:ref(2)P / 35246 FlyBaseID:FBgn0003231 Length:599 Species:Drosophila melanogaster
Sequence 2:NP_497158.3 Gene:sqst-5 / 28661656 WormBaseID:WBGene00269434 Length:192 Species:Caenorhabditis elegans


Alignment Length:186 Identity:44/186 - (23%)
Similarity:67/186 - (36%) Gaps:71/186 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 LRREIEL-YLFQERQLPK--------CDVR---------TFWIDADKDEIEI-VNQNDYEIFLAK 78
            |.:|.|| ::.|||:|..        |:.:         ||....||..:|| :::.|       
 Worm     3 LTKEEELEFIPQERRLDVLVNAQKTICETKEKKGRIVFVTFATKFDKKVVEITLDEED------- 60

  Fly    79 CESNMHVQVAPLAPVEEPKATKQEGSSANAEAPSVDDPSNF------------------------ 119
                         |:.:...|.||.....:....:|:|:|.                        
 Worm    61 -------------PLSQLYKTAQEIFPYFSWRFCLDEPTNLIEGLSNKRRVFGSIKQSRFYNFLY 112

  Fly   120 -------TIHDAVECDGCGLAPLIGFRYKCVQCSNYDLCQKCELAHKHPEHLMLRM 168
                   |.| ..:||.|........||||..|::||||::||..:.|..|.|||:
 Worm   113 LVITLLPTYH-PFDCDECKAECNWNNRYKCTICADYDLCRQCEAKNLHANHAMLRI 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ref(2)PNP_476700.1 PB1 6..88 CDD:413452 16/73 (22%)
ZZ 121..165 CDD:395451 17/43 (40%)
UBA_SQSTM 555..593 CDD:270505
sqst-5NP_497158.3 ZZ_NBR1_like 126..167 CDD:239080 18/40 (45%)
Blue background indicates that the domain is not in the aligned region.

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