DRSC/TRiP Functional Genomics Resources

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Protein Alignment ref(2)P and nbr1

DIOPT Version :10

Sequence 1:NP_476700.1 Gene:ref(2)P / 35246 FlyBaseID:FBgn0003231 Length:599 Species:Drosophila melanogaster
Sequence 2:NP_001342955.1 Gene:nbr1 / 2541353 PomBaseID:SPBP35G2.11C Length:397 Species:Schizosaccharomyces pombe


Alignment Length:111 Identity:36/111 - (32%)
Similarity:51/111 - (45%) Gaps:23/111 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 NDYEIFLAKCE--------SNMH--VQVAPLAPVEEPK--ATKQEGSSANAEAPSVDDPSNFTIH 122
            :||:|    ||        ||.|  |::....|...|.  ...|..|:...|:.|       |:|
pombe   154 DDYDI----CESCLTDNSHSNTHAFVRITKAYPHGLPSFHLFPQFLSAELFESAS-------TVH 207

  Fly   123 DAVECDGCGLAPLIGFRYKCVQCSNYDLCQKCELAHKHPEHLMLRM 168
            .:|:||.|...|::|.|:.|:.|.:||||..|.....|..|.|||:
pombe   208 RSVQCDNCLAHPIVGPRFHCLVCEDYDLCSSCVSHVHHDHHSMLRL 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ref(2)PNP_476700.1 PB1 6..88 CDD:413452 9/27 (33%)
ZZ 121..165 CDD:395451 17/43 (40%)
UBA_SQSTM 555..593 CDD:270505
nbr1NP_001342955.1 ZnF_ZZ 56..>91 CDD:197633
ZZ_NBR1_like 134..177 CDD:239080 9/26 (35%)
ZZ 210..253 CDD:412288 18/42 (43%)
NBR1_like 275..385 CDD:271343
Blue background indicates that the domain is not in the aligned region.

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