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Protein Alignment Hasp and RGD1564614

DIOPT Version :9

Sequence 1:	NP_001137842.2	Gene:	Hasp / 35238	FlyBaseID:	FBgn0032797	Length:	1677	Species:	Drosophila melanogaster
Sequence 2:	NP_001128264.1	Gene:	RGD1564614 / 498241	RGDID:	1564614	Length:	699	Species:	Rattus norvegicus

Alignment Length:	683	Identity:	173/683 - (25%)
Similarity:	243/683 - (35%)	Gaps:	161/683 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly   104 CLCDGVCGNSCIKPDRECPELAQPSLGQVTVAGRHFGARASYACPHGYHVVGLQ---SRLCQADG 165
            |:....|..|.|:.|.     ...|...:|.|   ...:..|.|..||.....:   |..|...|
  Rat    80 CIPSETCSKSDIEIDN-----GFFSESDLTYA---VNRKTRYVCKQGYTTANGERSGSITCLQTG 136

  Fly   166 NWAGAEPACKQNIYCLKPPQIEHARNSALPEQETFDLDSTVQYHCHTGYVTNGFPRAKCLAIDNL 230
             |: |:|:|   |.....|..|:|::.  .:...|.|:..:.|.||.|| .|.:...|...:...
  Rat   137 -WS-AQPSC---IKSCDVPVFENAKSK--NDSTWFKLNDKLDYECHIGY-ENKYKHTKGSIMCTT 193

  Fly   231 ASWYGP----DIQC-----EPRSCGQPPDPAYGWHAGECYTYGCKITYNCGTGYELVGKHERYCQ 286
            ..|...    :|:|     :||....|....        ||.|..:.::|..|:. ||.....|.
  Rat   194 DGWSDKPSCYEIECSIPILDPRLVVYPRKIK--------YTVGDLLKFSCRPGHR-VGPDSVQCY 249

  Fly   287 SDGSWTPKELPTCVLVTSVVCPTPENPK--NG------KATYTTLAYNSVVSYECRYGYTLVGES 343
             |..|:| ..|||   ...|....:.|:  ||      ||.|   ::..||.|:|:..:.|.|.:
  Rat   250 -DFGWSP-SFPTC---KGQVRSCGQYPELLNGEIKGTKKAEY---SHGDVVEYDCKPRFLLKGPN 306

  Fly   344 SSRCGADRKWSGTLPTCKE--INCGHPGVLYNGWIENIEAGTGLGASIIFRCQPEMMINGLGSSV 406
            ..:| .|.||: |||||.|  ..||....|.:|.::........|.|:.|.|.....:.|..|..
  Rat   307 KIQC-VDGKWT-TLPTCVEEKRTCGDIPALEHGSVKFSVPPYHHGDSVEFTCAETFTMIGQRSVS 369

  Fly   407 CQIDGRWRNALPECLA-----PCVVPTI-------------------------SQGNVYPIEIIT 441
            | |.|||.. ||.|:|     .|..|.:                         ||...|.|.|
  Rat   370 C-ISGRWAQ-LPRCVATVQLEKCKAPRLAVIGANKLEKDGLNHNSSISYKCRGSQKYGYSICI-- 430

  Fly   442 DENGTTIVHPPTTTTQS-----PTQ---TQSIGGVEKVKHGTALEVKCDENYEFPVSLLSPP--- 495
              ||.....|..|..:.     |.|   .|.|....|...|..:.|.|.:.|     |...|
  Rat   431 --NGRWDPEPTCTRKEKAFCPPPPQIPNAQVIDTTVKYLDGEKVSVLCQDGY-----LTQGPEEM 488

  Fly   496 TCNNGTWSIIPRCVPARCKSMPRPPKHGMVMAPKT-------------EHGMKARFKCKDGFKLV 547
            .|.:|.|..:|||......|.|....||.:..|:.             |||....:.|.|||::.
  Rat   489 VCKHGRWQSLPRCTAKITCSQPPKIDHGSIKLPRLSDAGRDAIDSSSHEHGTTFSYVCDDGFRIS 553

  Fly   548 SPEGKDVTDPHDYVLTCSFGNWTGETPKCDEVF--CSFPGYIPNGKVLLVGNMGLYDYRPYVKKI 610
            ...|          :||..|.|: ..|:|.|..  |..|..|.||.:.   ::.|..|.|.
  Rat   554 KENG----------VTCHMGKWS-SPPRCVESTGKCGPPPTIENGDIT---SLSLPVYAPL---- 600

  Fly   611 VNNKQIMYDCDKGYVLEVGPPGATCVGGKWR--PLDLPQCLLGQHPRLRWN----RRRRRSLQIR 669
               ..:.|.|...|.:: |....||..|:|.  |..|..|:|.:....|.|    |.:.:.:.|:
  Rat   601 ---SSVEYQCQSFYKMQ-GSKKITCKNGEWEEPPKCLHACVLTEEIMRRQNIIPKRTKNKKIYIQ 661

  Fly   670 Q--------LRSMYLLQRQRQLQRQLIDNQ-NY 693
            .        |.:....|...:.:.|.||.. ||
  Rat   662 SGDYVEFVCLTAYQKAQGSPEFRTQCIDGHINY 694

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.