DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cyst and net1

DIOPT Version :10

Sequence 1:NP_001260588.1 Gene:cyst / 35237 FlyBaseID:FBgn0032796 Length:1319 Species:Drosophila melanogaster
Sequence 2:NP_001072884.2 Gene:net1 / 780346 XenbaseID:XB-GENE-487220 Length:585 Species:Xenopus tropicalis


Alignment Length:436 Identity:104/436 - (23%)
Similarity:177/436 - (40%) Gaps:86/436 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   424 WTPNVPRELLKTLKDLQIKRQEHIYEFIMTEKHHCQTLIVMQKVFVESLERHFPSLNLNSM---- 484
            |:..:...:.::|...:|||||.|:|....|:.....|.:.:|.:      |.|.|.|:.|    
 Frog   164 WSEMLDINMKESLSTKEIKRQEAIFEMTKGEQDLIDDLKLARKAY------HDPMLKLSIMSEEE 222

  Fly   485 ----FPRLQQLTDLHTCFLRQLRLKQREQHMVDSIADILLDFFSLEQAQCLRL-AYGEFCANHRS 544
                |..|.....||...|.:|....:....|..|..||:::..       || ||.|:|:|..:
 Frog   223 LTQIFGDLDSYIPLHEELLAKLGEATKADGTVGQIGPILINWLP-------RLNAYKEYCSNQLA 280

  Fly   545 A---LDQFKLCLTEPSFAEWYKHCLQNPLLKKKGIPECILFVTQRLTKYPLLIEPLLKSARDNKL 606
            |   ||:.||   :....::.:.||::|..:|..:...:.....||.|||||::.:|:....:..
 Frog   281 AKALLDKKKL---DRRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILRHTPKDHP 342

  Fly   607 ETDKLQHALNLVKSLLVDVDACVAEKELRERQLEIYGRVDAKSFAIYKNKPFRKTELGVESRRRL 671
            :|..|..||.|::.:|.|::       |::.:.|....:|...:...|.|     :|.:||.:.|
 Frog   343 DTKGLHEALCLIQGVLTDIN-------LKKGESECQYYIDKLEYLDDKQK-----DLRIESSKAL 395

  Fly   672 KFDGLATLMQGRAKTQLVL---VVVLTDCLCFLSENSGHNKYSFFTPEHKAGVVPLQKLLIRE-- 731
            ...|......|. |..|.|   |:|||..:.       .|::..|....:.  :|:|.|::.:  
 Frog   396 LCHGELKNKNGH-KLFLFLFQDVLVLTRPVI-------RNEHQHFQVYRQP--IPVQDLVLEDLQ 450

  Fly   732 ----KAGTESRGIYIISSNPD--------------FPEMYELKVQTPKDKNTWIQTIRQAV---L 775
                :.|...||.:   ||.|              ..:.:.|:......|..|:..|:.||   .
 Frog   451 DGDVRMGGSFRGAF---SNSDKAKNIFRVRFKDAGAGQSHTLQANDVFHKQQWLNCIKTAVSPYQ 512

  Fly   776 DCPATDIIEAEDLT--AEEKLRIGVNKRE-----TIEKMRQKDIEQ 814
            ....|:..|..||.  .||......|.::     ||..:.:.|:|:
 Frog   513 QASPTEQKELPDLNEECEENNPPATNSKDHRRSSTISGIMEMDLEE 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cystNP_001260588.1 RhoGEF 447..627 CDD:214619 51/191 (27%)
PH_ARHGEF2_18_like 671..774 CDD:275432 25/125 (20%)
SMC_prok_B 935..>1073 CDD:274008
net1NP_001072884.2 RhoGEF 186..362 CDD:214619 51/191 (27%)
PH_Net1 376..510 CDD:270044 32/151 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.