DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment swm and SPBC902.04

DIOPT Version :9

Sequence 1:NP_001260586.1 Gene:swm / 35235 FlyBaseID:FBgn0002044 Length:1063 Species:Drosophila melanogaster
Sequence 2:NP_595202.1 Gene:SPBC902.04 / 2541281 PomBaseID:SPBC902.04 Length:589 Species:Schizosaccharomyces pombe


Alignment Length:1061 Identity:178/1061 - (16%)
Similarity:302/1061 - (28%) Gaps:526/1061 - (49%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ENSDKLKDWLSVVLEPLCDADSSALARYVIALLKKDKSDKDLKRIMIEQLDVFLSEETTRFVERL 68
            |:::.||.:|...|||:.|||:|.|:.|.:|||:.|.|:::::::...||:.||.:||..||:::
pombe     7 EHAEYLKRYLEQALEPISDADASVLSDYAMALLRHDSSEEEVRQLCYSQLEDFLRQETIPFVDKI 71

  Fly    69 FDAIASEEYLTVPAAPLITASSASTAELTVDQELALVIDGPQDDIEAVLVADSPPPPPKDNVIKP 133
            ||.:..:.||                                                       
pombe    72 FDVLREKSYL------------------------------------------------------- 81

  Fly   134 DSNQVKLEQASQDAREAEALAFISQEAGIAMHVPTDAKPAFDQHKTKDSHNQQSASNYQHHHVRS 198
                                                                :.|||..      
pombe    82 ----------------------------------------------------EGASNMP------ 88

  Fly   199 ASPPGRSSGVSGSGGGGPGGAGLAAGYADKENQPRDSRRRRASLRSRSRSRSRSNERAFRRSRSR 263
                  |:|:                                                       
pombe    89 ------STGM------------------------------------------------------- 92

  Fly   264 DRRVNEREKTQRQFRNKSPPGSQTDNRHHGRRNFDRRRIGGNADDRPRFGNNKSRRSHSRSMSPE 328
               |.|                                             ..||.|.:.||.|.
pombe    93 ---VTE---------------------------------------------EVSRYSPTSSMIPA 109

  Fly   329 RNARRNQNSPDRVQTAQANLIPAPV----APPAPVEHPASHPRQRCRDFDEKGYCVRGETCPWDH 389
            .|:.....:.......:.|..|:.|    .|  |:.|||:                   |.|   
pombe   110 TNSMETNFNNSLPAVGKTNTFPSQVPNMFGP--PLYHPAA-------------------TAP--- 150

  Fly   390 GVNPVVFEGINNTSLMMSMREYNPDAPEIWARSGGPPPGAGQGPVPPPTQPGQTTINPFSGNVRP 454
                               .|:.|..|             |.|.:|                   
pombe   151 -------------------SEFMPSIP-------------GFGNLP------------------- 164

  Fly   455 TTLMSGSGPSPMGVPNPADYARNPGAPPQAAMMPF-PFNPTAVTTPLQRQLIPIPVVDGAPTGGV 518
                                  ||..||    :|| ||||.|..        |.|     |...:
pombe   165 ----------------------NPAMPP----IPFLPFNPAAQP--------PFP-----PPFKM 190

  Fly   519 AEVGKRRFELEDTVAIADVPTKRKVPINSRLGP-RVNPNMQQH--------------NSSLELRK 568
            .  |||.|.:...   .:...:|..|.|.|..| :..|  |.|              :::||:|.
pombe   191 R--GKRGFGMRHE---HNSELRRHSPGNRRFNPYKAYP--QPHLGHRFSRNAGNDPTSTALEVRN 248

  Fly   569 VPRGLNTIAHLNNHFAKFGKIVNIQVSYEGDP--EAAIVTFSTHAEANVAYRSTEAVLNNRFIKV 631
            :|.......::.:.|:|||.:..:::    :|  .:.::.|::|..||.|:.|.|.:.||||||:
pombe   249 IPEEHFNEENIRSFFSKFGVLEKVEL----NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIKI 309

  Fly   632 FWHNDSSGADVGQMNQMGGGGGGGGRKNASQYHLHNVPAVPTPNADGAKISNANPLTEAGAGNIG 696
            ||:|.|.|                         .||.|         .|.::....|.:.:.|: 
pombe   310 FWYNPSKG-------------------------FHNRP---------KKFASHKSPTTSDSSNV- 339

  Fly   697 TPATEQANTAAPASMRLKLNTTTAGGSAGGAAGAGAPGSGRPLNPAANAASIRKKQEEQQKAVHQ 761
                |.:....|||:                           |........|.::|.:.::.:.:
pombe   340 ----ESSEDVDPASL---------------------------LQNEEFHKLIEERQRQHEERLKR 373

  Fly   762 L-AN-----GLRKRKQELLQSYMKQMKTALELVERMDQQDPQRAPTLQTIKVLQMTIDKLRKEIK 820
            : ||     .|.::|:||.|..:|:.:..::.::..|:...:|...|:|...|          :|
pombe   374 INANKKALEELNQKKRELAQQQLKEQELLMQKIKETDRSGNKRLMLLETQHSL----------LK 428

  Fly   821 ADQDQLQAQMQQQQQQQQPPVKKTKEQQKKELLDMELELIAQQQEGNDTTAIQKRLEELQRNLGV 885
            |:.|.|..           ||....|                                       
pombe   429 AEADCLGL-----------PVSNVSE--------------------------------------- 443

  Fly   886 GSAANNKSTHYAPASGAPGGGA-------GRKRPNLPEGPTRVDRRPKAIVVTGFAAEEAD---- 939
             |.|.:..:|:..|||.|..|.       ||.|.:: .....:|.||..:.|...:.|:.:    
pombe   444 -SPAASNGSHHPYASGLPQRGTNTFFRGRGRGRGDM-FASMSIDNRPTKLRVINVSPEKNEALLQ 506

  Fly   940 --FVLGHFKNFGEISKHDVDREIPQLILSYATRLNAEQAVLRG--KMYKDKRLQISWAPVVTPAP 1000
              |.:|.::...|.|       ..:.::|:..|.:||: ...|  .:.|.:.|:::|.|......
pombe   507 YLFTVGGYEEITEPS-------TTERLISFQNRNSAEK-FFGGVRNVEKLQELELAWVPKTAVTT 563

  Fly  1001 APMAAPVEKSAAPGDMSVSLE 1021
            ...:....:|....:|::.:|
pombe   564 NTTSMETGESNTSDNMNIEVE 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swmNP_001260586.1 RRM1_RBM26_like 561..634 CDD:240703 23/74 (31%)
RRM2_RBM26_like 921..992 CDD:240704 16/78 (21%)
SPBC902.04NP_595202.1 PWI 12..75 CDD:295364 27/62 (44%)
RRM1_RBM26_like 241..312 CDD:240703 23/74 (31%)
NAM-associated 299..432 CDD:291001 40/208 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 62 1.000 Domainoid score I2966
eggNOG 1 0.900 - - E1_KOG2135
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 132 1.000 Inparanoid score I1417
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002919
OrthoInspector 1 1.000 - - oto102153
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR14398
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3653
SonicParanoid 1 1.000 - - X1927
TreeFam 00.000 Not matched by this tool.
99.080

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