DRSC/TRiP Functional Genomics Resources

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Protein Alignment RanGAP and ran-2

DIOPT Version :10

Sequence 1:NP_476712.1 Gene:RanGAP / 35223 FlyBaseID:FBgn0003346 Length:596 Species:Drosophila melanogaster
Sequence 2:NP_741233.2 Gene:ran-2 / 176115 WormBaseID:WBGene00004303 Length:960 Species:Caenorhabditis elegans


Alignment Length:501 Identity:157/501 - (31%)
Similarity:248/501 - (49%) Gaps:60/501 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FASMAAQLGQEQG-----ISFENKVLSWNTAADVQDVVDALNKQTTVHYLNLDGNTLGVEAAKAI 65
            |..|..:..|:..     :||.:|.|..:||...:.||..:...:::..|.|.|||||:.|...|
 Worm   432 FGCMKIEDNQQNSNGNGMVSFLDKSLKLDTAESAEPVVKVIAAASSMKALELRGNTLGIAAGNVI 496

  Fly    66 GEGLKRHPEFRKALWKNMFTGRLISEIPEALKHLGAALIVAGAKLTVLDLSDNALGPNGMRGLEE 130
            .:.|:.|||..:.||.::|||||.:|||..|:.||.|::.||.|:..|||||||.||.|...|::
 Worm   497 AKALESHPELERCLWSDLFTGRLKNEIPPILEALGKAMMTAGCKIKELDLSDNAFGPIGADALKD 561

  Fly   131 LLRSPVCYSLQELLLCNCGLGPEGGSMLSRALIDLHANANKAGFP--LQLRVFIGSRNRLEDAGA 193
            ||.||..:||:.|.|.|.||| .||..::::|.:....:...|..  |:|:.||..|||||:.||
 Worm   562 LLESPSSFSLEVLKLNNNGLG-IGGKQIAKSLTECLRKSIAVGGENRLRLKTFIAGRNRLENPGA 625

  Fly   194 TEMATAFQTLKTFEEIVLEQNSIYIEGVEALAESFKHNPHLRVLNMNDNTLKSEGAEKIAEALPF 258
            ..:|..|:.|:|.|...:.||.|:.||:.||..:.|||.:||.|.:.|||:..:||:.:|:.|..
 Worm   626 HALAATFKALETVEWFDVRQNGIHEEGIRALVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLES 690

  Fly   259 LPLLREMSFGDCLIKTNGAYHFGEALERGNER-LEVIDLGFNEINSDGGLVLVNAM----GNKPK 318
            .|.|..::..||||:..|..:..:.|...:.| |:.:.|..||:......:|:...    |..||
 Worm   691 WPKLEVLNLSDCLIRDAGCNYIIDHLNPQHHRHLKNVYLCGNELTPPVAKLLIQKWSKFDGLTPK 755

  Fly   319 LRILNLDGNSFGEEGSEKIISEMSKLPTAAALQPFQHQEEEDLEDEYQADKQDADYEEEEEVHEH 383
             .:|::..||||:|.|:           .|.:.|    |..::.||   |......:.::|.:..
 Worm   756 -PVLHIHTNSFGDEFSD-----------VAGMAP----ENVNVGDE---DDDLGSLDGDQEEYNS 801

  Fly   384 ANDTTEEADEDSEGDEDDEE------DEGDEEYSNVAEETAYVTTNAYTTKLFNDTTNSMASETF 442
            .:..:|:||.|.:.::||||      |.|:.:.....:....:..: :.::...||.        
 Worm   802 KSSDSEDADLDDDDEDDDEEAEIQIIDNGESQLKLAMDRIDRLDID-FESRFQEDTA-------- 857

  Fly   443 AVANKTISQKCTPEKFCLSQKPCSQEDFDSLDMDNKLEALQSIVNQ 488
                :.|.|...|.|.|...:|..|         ..:|..::||.:
 Worm   858 ----RVILQLSAPLKSCKMSEPALQ---------RAIEVAENIVRR 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RanGAPNP_476712.1 leucine-rich repeat 45..77 CDD:275380 13/31 (42%)
LRR_RI 50..337 CDD:238064 117/293 (40%)
leucine-rich repeat 78..109 CDD:275380 16/30 (53%)
leucine-rich repeat 110..139 CDD:275380 15/28 (54%)
leucine-rich repeat 140..167 CDD:275380 10/26 (38%)
leucine-rich repeat 178..205 CDD:275380 13/26 (50%)
leucine-rich repeat 206..233 CDD:275380 11/26 (42%)
leucine-rich repeat 234..261 CDD:275380 10/26 (38%)
leucine-rich repeat 262..290 CDD:275380 7/27 (26%)
ran-2NP_741233.2 LRR_RI 49..370 CDD:238064
leucine-rich repeat 72..102 CDD:275380
leucine-rich repeat 103..134 CDD:275380
leucine-rich repeat 135..164 CDD:275380
leucine-rich repeat 165..201 CDD:275380
leucine-rich repeat 202..229 CDD:275380
leucine-rich repeat 230..257 CDD:275380
leucine-rich repeat 258..285 CDD:275380
leucine-rich repeat 286..315 CDD:275380
leucine-rich repeat 316..337 CDD:275380
LRR_RI 453..774 CDD:238064 123/333 (37%)
leucine-rich repeat 478..508 CDD:275380 13/29 (45%)
leucine-rich repeat 509..532 CDD:275380 12/22 (55%)
leucine-rich repeat 541..570 CDD:275380 15/28 (54%)
leucine-rich repeat 571..609 CDD:275380 11/38 (29%)
leucine-rich repeat 610..637 CDD:275380 13/26 (50%)
leucine-rich repeat 638..665 CDD:275380 11/26 (42%)
leucine-rich repeat 666..693 CDD:275380 10/26 (38%)
leucine-rich repeat 694..723 CDD:275380 7/28 (25%)
leucine-rich repeat 724..742 CDD:275380 4/17 (24%)
Blue background indicates that the domain is not in the aligned region.

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