DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Rab9 and RABG3A

DIOPT Version :9

Sequence 1:	NP_609966.1	Gene:	Rab9 / 35221	FlyBaseID:	FBgn0032782	Length:	256	Species:	Drosophila melanogaster
Sequence 2:	NP_001154217.1	Gene:	RABG3A / 826558	AraportID:	AT4G09720	Length:	217	Species:	Arabidopsis thaliana

Alignment Length:	178	Identity:	71/178 - (39%)
Similarity:	99/178 - (55%)	Gaps:	13/178 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly     8 QKSKLLKVVILGDGGVGKSALLTRFVANRYEENNFHTIGVEFMNKDIVVDGERYTLQIWDTAGQE 72
            ::..||||::|||.||||::|:.::|..::......|||.:|:.|::.:..:..|||||||||||
plant     4 RRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSMQYKATIGADFVTKELQIGEKLVTLQIWDTAGQE 68

  Fly    73 RFRALRTPFYRGSDICLLCYALDDRDSLKGLGVWRNEFLNYA------------DVDQDKFPFIV 125
            ||::|...||||:|.|.|.|.::...|...|..|..|||..|            ..|...|||||
plant    69 RFQSLGAAFYRGADCCALVYDVNVLRSFDNLETWHEEFLKQAWNIGMWTIAEASPSDPKTFPFIV 133

  Fly   126 VGNKNDIP-AQKRQVSSDAVQQWCAEQKVACHIETSSKAATNVTDAFV 172
            :|||.|:. ...|.||......|||......:.|||:|...||.:||:
plant   134 LGNKIDVDGGSSRVVSDKKAADWCASNGNIPYFETSAKDDFNVDEAFL 181

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rab9	NP_609966.1	Rab9	8..178	CDD:206697	71/178 (40%)
Rab9	NP_609966.1	Ras	14..177	CDD:278499	69/172 (40%)
RABG3A	NP_001154217.1	Rab7	9..193	CDD:206655	70/173 (40%)
RABG3A	NP_001154217.1	RAB	9..190	CDD:197555	70/173 (40%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0394
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1172019at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR47981
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.920