DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab9 and RABG3c

DIOPT Version :9

Sequence 1:NP_609966.1 Gene:Rab9 / 35221 FlyBaseID:FBgn0032782 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_188231.1 Gene:RABG3c / 820855 AraportID:AT3G16100 Length:206 Species:Arabidopsis thaliana


Alignment Length:196 Identity:81/196 - (41%)
Similarity:114/196 - (58%) Gaps:19/196 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LLKVVILGDGGVGKSALLTRFVANRYEENNFHTIGVEFMNKDIVVDGERYTLQIWDTAGQERFRA 76
            ||||:||||.||||::|:.:||..::......|||.:|:.|::.:|...:|||||||||||||::
plant     8 LLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQIWDTAGQERFQS 72

  Fly    77 LRTPFYRGSDICLLCYALDDRDSLKGLGVWRNEFLNYAD-VDQDKFPFIVVGNKNDIPAQK-RQV 139
            |...||||:|.|:|...::...|.:.|..||.|||..|. .|.:.|||:|:|||.|:...| |.|
plant    73 LGVAFYRGADCCVLVNDVNVMKSFENLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGKSRVV 137

  Fly   140 SSDAVQQWCAEQKVACHIETSSKAATNVTDAFVLGLRQWRHMECVAEAELRQH-------GDTID 197
            :....:.|||.:....:.|||:|...||..||          ||:|:..|:..       .||||
plant   138 TEKKAKSWCASKGNIPYFETSAKDGVNVDAAF----------ECIAKNALKNEPEEEVYLPDTID 192

  Fly   198 L 198
            :
plant   193 V 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9NP_609966.1 Rab9 8..178 CDD:206697 73/167 (44%)
Ras 14..177 CDD:278499 71/164 (43%)
RABG3cNP_188231.1 Rab7 9..182 CDD:206655 76/182 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0394
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1172019at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47981
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.