Protein Alignment RtcB and rtcb

DIOPT Version :10

• Sequence 1: NP_609965.1
• Gene: RtcB / 35220
• FlyBaseID: FBgn0032781
• Length: 506
• Species: Drosophila melanogaster
• Sequence 2: NP_998268.1
• Gene: rtcb / 406376
• ZFINID: ZDB-GENE-040426-2096
• Length: 505
• Species: Danio rerio
• Alignment Length: 503
• Identity: 425/503 - (84%)
• Similarity: 460/503 - (91%)
• Gaps: 0/503 - (0%)

  Fly     4 RPYNDELRYLEKVSDHCWRIKKGFQPNMNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVK 68
            |.|||||:||:|:..:||||||||.|||.|||.||||..||:||.|||:|:||.|..|||||.:|
Zfish     3 RSYNDELQYLDKIHKNCWRIKKGFVPNMLVEGVFYVNDPLEKLMFEELRNACRGGGFGGFLPAMK 67

  Fly    69 QIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMNDPLSVVSPGGVGFDINCGVRLLRTNLY 133
            ||.|||||||||.|||||||:||||||||||||||||.:|.:||||||||||||||||||||||.
Zfish    68 QIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMENPDAVVSPGGVGFDINCGVRLLRTNLD 132

  Fly   134 EKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYG 198
            |.|||||||||||||||||||||||||:|||.|:|||||||||:||||||||.||||||||||||
Zfish   133 EGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYG 197

  Fly   199 RMLNADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGS 263
            |||.|||.|||.:||||||||||||||||||||||||||||:.::|.||||:.||||.|||||||
Zfish   198 RMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGS 262

  Fly   264 RGFGHQVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328
            ||.||||||||||.||||||||:|..||||||||||.|.|||||||.||||.|:|||||||||||
Zfish   263 RGLGHQVATDALVAMEKAMKRDRITVNDRQLACARITSEEGQDYLKGMAAAGNYAWVNRSSMTFL 327

  Fly   329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPLIPVDY 393
            |||||:|:|:||||||||||||||||||||||.|||||:::.|||||||||||||||||||||||
Zfish   328 TRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEEHMVDGRQKTLLVHRKGSTRAFPPHHPLIPVDY 392

  Fly   394 QLTGQPVLVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKDVLDKLDQLGI 458
            ||||||||:||||||||||||||||||.||||:|||||||||||||||||||::||||||..:||
Zfish   393 QLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGI 457

  Fly   459 AIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
            |||||||||||||||||||:|||||:|||.||||||.||:||||||||
Zfish   458 AIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RtcB	NP_609965.1	RtcB	69..506	CDD:460080	379/436 (87%)
rtcb	NP_998268.1	RtcB	12..505	CDD:441296	416/492 (85%)