DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lectin-galC1 and Clec10a

DIOPT Version :9

Sequence 1:NP_001188845.1 Gene:Lectin-galC1 / 35216 FlyBaseID:FBgn0016675 Length:186 Species:Drosophila melanogaster
Sequence 2:XP_008766090.1 Gene:Clec10a / 64195 RGDID:621158 Length:307 Species:Rattus norvegicus


Alignment Length:141 Identity:40/141 - (28%)
Similarity:52/141 - (36%) Gaps:46/141 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 YFFGTESLNWYEAYEKCRELNSELVTFET--DQEFDAVTAFLTANGSRLTY-----------WTS 102
            |:|......|.||.:.|:..||.||...:  :|.|     ..|..||.:|:           |..
  Rat   188 YWFSQSGKPWPEADKYCQLENSNLVAVNSLAEQNF-----LQTHMGSVVTWIGLTDQNGPWRWVD 247

  Fly   103 GNDLAKTGSHRWFTNAQRISSLRWARNQPDN-----AGQKEHCIHLGYIYKDSRKFELNDRPCSQ 162
            |.|..|..:|             ||..||||     .|..|.|.|   ...|.|   .||..| |
  Rat   248 GTDYEKGFTH-------------WAPKQPDNWYGHGLGGGEDCAH---FTSDGR---WNDDVC-Q 292

  Fly   163 DPNSLFKYICE 173
            .|   ::::||
  Rat   293 RP---YRWVCE 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lectin-galC1NP_001188845.1 CLECT 51..173 CDD:153057 38/139 (27%)
Clec10aXP_008766090.1 Lectin_N 21..166 CDD:281887
Apolipoprotein <63..166 CDD:279749
CLECT_DC-SIGN_like 176..301 CDD:153060 40/141 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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