DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lectin-galC1 and vcana

DIOPT Version :9

Sequence 1:NP_001188845.1 Gene:Lectin-galC1 / 35216 FlyBaseID:FBgn0016675 Length:186 Species:Drosophila melanogaster
Sequence 2:XP_021331663.1 Gene:vcana / 116993 ZFINID:ZDB-GENE-011023-1 Length:8936 Species:Danio rerio


Alignment Length:227 Identity:47/227 - (20%)
Similarity:76/227 - (33%) Gaps:79/227 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LVIAKTGWTREKFSIQVNEGNT------------------------FGALVKAEPFT------KI 46
            :.|.:.|::.|:..|.::|.:|                        .|||.:.:..|      |.
Zfish  8641 ICICQPGYSGEQCEIDIDECHTNPCRNGGTCIDGLNSFTCLCLPSYAGALCEQDTETCSYGWHKF 8705

  Fly    47 NDGYYFFGTESLNWYEAYEKCRELNSELVTFETDQEFDAVTAFLTANGSRLTY---WTSGNDLAK 108
            ....|.:.....||..|..:||...:.|.:..:..|...:        :||.:   |...||...
Zfish  8706 QGHCYKYFPHRRNWDTAERECRLQGAHLASVLSHDEQQYI--------NRLGHDYQWIGLNDKMF 8762

  Fly   109 TGSHRWFTNAQRISSLRWARNQPDN-AGQKEHCIHLGYIYKDSRKFELNDRP------------- 159
            ....|| |:.:.:....|..||||: ....|.|:.:.: ::|.   :.||.|             
Zfish  8763 ENDFRW-TDGRVVQYENWRPNQPDSFFSSGEDCVVMIW-HEDG---QWNDVPCNYHLTFTCKKGT 8822

  Fly   160 --CSQDP-----------------NSLFKYIC 172
              |||.|                 |||.:|.|
Zfish  8823 VSCSQPPIVHNARTFGQPRPRYEINSLIRYQC 8854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lectin-galC1NP_001188845.1 CLECT 51..173 CDD:153057 36/158 (23%)
vcanaXP_021331663.1 Ig 36..148 CDD:325142
Link_domain_CSPGs_modules_1_3 147..241 CDD:239594
Link_domain_CSPGs_modules_2_4 249..343 CDD:239597
Herpes_BLLF1 <5897..>6290 CDD:330317
EGF 8622..8652 CDD:306513 2/10 (20%)
EGF_CA 8656..8692 CDD:238011 5/35 (14%)
CLECT_CSPGs 8698..8821 CDD:153058 28/135 (21%)
CCP 8825..8881 CDD:153056 9/30 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1509611at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.