DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and PDLIM7

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_005442.2 Gene:PDLIM7 / 9260 HGNCID:22958 Length:457 Species:Homo sapiens


Alignment Length:480 Identity:128/480 - (26%)
Similarity:177/480 - (36%) Gaps:109/480 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 GHDFN-----------GSSTTPGYA-----------NQGSLPR-------QAAG--ASTGLSELD 131
            |.|||           |.:...|.|           |.|||..       :|.|  .|.|||...
Human    21 GKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQ 85

  Fly   132 SLLQDLQKIDVPV------NYSTPVSKYNTMNSYATVEERPSVDSLLKELDNAHIYAVPNGSAHK 190
            .:....||...|.      .::..||...|...:..   .|..||..::........||:.|..:
Human    86 PVQSKPQKASAPAADPPRYTFAPSVSLNKTARPFGA---PPPADSAPQQNGQPLRPLVPDASKQR 147

  Fly   191 --------SPTPG----RHVTITVRETKTEKLTGPDGPVGTVEEQIVQQKD----------SYTP 233
                    .|.||    |...|....|.||.:..||      ||.:.:...          |.||
Human   148 LMENTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPD------EEHLKKSSQVPRTEAPAPASSTP 206

  Fly   234 NHAVPGQQVHQAYTSQATKELDDLMASLSDFKVSNGTNGIGNGSHPQQHSSTVQHQTVTDYARPN 298
            ....||... .:.||:....:|...|.                .:....:|||.          .
Human   207 QEPWPGPTA-PSPTSRPPWAVDPAFAE----------------RYAPDKTSTVL----------T 244

  Fly   299 KGSQQAHLTQTIEETTIVEDSREDQLDSMLGNLQANMSRQGVNTVQKGCCNACEKPIVGQVITAL 363
            :.||.|..|.....|:||:        :..|.:....|..|...|    |:.|.|.|.|:.:.||
Human   245 RHSQPATPTPLQSRTSIVQ--------AAAGGVPGGGSNNGKTPV----CHQCHKVIRGRYLVAL 297

  Fly   364 GKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCNGAILDKCVTALDKTWHT 428
            |..:|||.|.|:.|.:.|....|||..|..:|.|.|...::|.||.|...|..:.:.||..|||.
Human   298 GHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPPCYDVRYAPSCAKCKKKITGEIMHALKMTWHV 362

  Fly   429 EHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAI--MENYISALNSQWHPDCFV 491
            ..|.||.|........|:..:|.|||..||.:||..||:||:..|  .:.::.||...||..|||
Human   363 HCFTCAACKTPIRNRAFYMEEGVPYCERDYEKMFGTKCHGCDFKIDAGDRFLEALGFSWHDTCFV 427

  Fly   492 CRDCRQPFQGGSFFDHEGLPYCETH 516
            |..|:...:|.:|:..:..|.|::|
Human   428 CAICQINLEGKTFYSKKDRPLCKSH 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 21/51 (41%)
LIM2_Paxillin_like 407..458 CDD:188723 18/50 (36%)
LIM3_Paxillin_like 466..518 CDD:188724 18/53 (34%)
LIM4_Paxillin 525..576 CDD:188795
PDLIM7NP_005442.2 PDZ_signaling 5..79 CDD:238492 13/57 (23%)
Atrophin-1 <81..254 CDD:331285 41/208 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 82..142 11/62 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 176..226 13/56 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..258 7/28 (25%)
LIM1_Enigma 282..333 CDD:188836 21/50 (42%)
LIM2_Enigma 341..392 CDD:188840 18/50 (36%)
LIM3_Enigma 400..454 CDD:188842 18/53 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.810

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