DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and PXN

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_016875215.1 Gene:PXN / 5829 HGNCID:9718 Length:1135 Species:Homo sapiens


Alignment Length:623 Identity:265/623 - (42%)
Similarity:326/623 - (52%) Gaps:142/623 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KIDPG--ARQPYRTARSKGILPGYALLADLQNSVPGQPQQPQPQYG---------------TVQP 55
            ::||.  :|.|.:.          .|:|:||..:..||:..:|...               ||||
Human   604 RLDPATLSRTPSQE----------QLIAELQGRLGIQPEAEEPAEAAGPSAQDWLTEGVIITVQP 658

  Fly    56 K-----HQALQQQQFVDNTPGYGSLRGK----AQPQVYQEHYSVETRSPTAGH--DFNGSSTTPG 109
            :     .|.:::..|...:|  ..||..    |.|.|           |...|  |...||::|.
Human   659 RGKRAGGQLVEKVVFPPGSP--IPLRRTISVLASPSV-----------PLLQHRTDAAASSSSPL 710

  Fly   110 YANQGSLPRQAAGASTGLSELDSLLQDL--QKIDVPVNYSTPVSKYNTMNSY-ATVEERP----- 166
            .:...|.|...:..:.|.|.:.|..::.  :.:..|   :.|:...:||.|. ...:|.|     
Human   711 PSLLASSPLGPSAYTCGSSGVQSAGEEPHDEGVQGP---ALPIPAPHTMRSVGCQTDEDPLFPPM 772

  Fly   167 SVDSLLKELDNAHIYAV--PNGSAHKSPTPGRHVTITVRETKTEKLTGPDGPVGT--VEEQI--- 224
            .:..|.:..|....:|.  |......||                  .|.|...|:  :||.:   
Human   773 QIQGLEQRADGERCWAAGWPRDGGRSSP------------------GGQDEGGGSWPLEEVVLLV 819

  Fly   225 -----VQQKDSYTPNHAVPGQQVHQAYTSQATKEL--DDLMASLSDFKVSNGTNGIGNGSHPQQH 282
                 ||:.:.|.          |.......|..|  .|.......|.....|   |:.|.|.  
Human   820 SISSSVQEGEKYP----------HPCAARHRTPSLRSPDQPPPCPQFMAQGKT---GSSSPPG-- 869

  Fly   283 SSTVQHQTVTDYARPNKGSQQAHLTQTIEETTIVEDSREDQLDSMLGNLQANMSRQGVNTVQKGC 347
                        ..|..||                     |||||||:||:::::.||.||.||.
Human   870 ------------GPPKPGS---------------------QLDSMLGSLQSDLNKLGVATVAKGV 901

  Fly   348 CNACEKPIVGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCNG 412
            |.||:|||.|||:||:|||||||||.|.||.:|:|:||||||||.||||.||||||||||.||||
Human   902 CGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDYHNLFSPRCYYCNG 966

  Fly   413 AILDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAIMENY 477
            .||||.|||||:|||.|||||||||..||.|||||:|||.|||.|||:||||||.||.|||:|||
Human   967 PILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDMFAPKCGGCARAILENY 1031

  Fly   478 ISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCSKPITGRCITAMFK 542
            |||||:.|||:|||||:|..||..||||:|:|.||||.|||.:|||||:||.|||||||||||.|
Human  1032 ISALNTLWHPECFVCRECFTPFVNGSFFEHDGQPYCEVHYHERRGSLCSGCQKPITGRCITAMAK 1096

  Fly   543 KFHPEHFVCAFCLKQLNKGTFKEQKDKPYCHTCFDKIF 580
            ||||||||||||||||||||||||.|||||..||.|:|
Human  1097 KFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQNCFLKLF 1134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 38/51 (75%)
LIM2_Paxillin_like 407..458 CDD:188723 39/50 (78%)
LIM3_Paxillin_like 466..518 CDD:188724 36/51 (71%)
LIM4_Paxillin 525..576 CDD:188795 44/50 (88%)
PXNXP_016875215.1 Paxillin 60..259 CDD:281527
LIM1_Paxillin_like 902..954 CDD:259830 38/51 (75%)
LIM2_Paxillin 961..1012 CDD:188791 39/50 (78%)
LIM3_Paxillin_like 1020..1072 CDD:188724 36/51 (71%)
LIM4_Paxillin 1079..1130 CDD:188795 44/50 (88%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165149731
Domainoid 1 1.000 110 1.000 Domainoid score I6315
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 487 1.000 Inparanoid score I1442
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 1 1.000 - - oto89752
orthoMCL 1 0.900 - - OOG6_104097
Panther 1 1.100 - - LDO PTHR24216
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1093
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1413.790

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