DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and pdlim4

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_001036161.1 Gene:pdlim4 / 569404 ZFINID:ZDB-GENE-070308-5 Length:349 Species:Danio rerio


Alignment Length:427 Identity:83/427 - (19%)
Similarity:123/427 - (28%) Gaps:177/427 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 AGASTGLSELDSLLQDLQKIDVPVNYSTPVSKYNTMNSYATVEERPSVDSLLKELDNAHIYAVPN 185
            |.:.||:.||.               ::|.|              |:::|     |:.....:.:
Zfish    86 AWSPTGMEELK---------------TSPFS--------------PTLES-----DSQTFRPISS 116

  Fly   186 GSAHKSPTPGRHVTITVRETKTEKLTGPDGPV-GTVEEQIVQQKDSYTPNHAVPGQQVHQAYTSQ 249
            |   .||||              |...|..|: |.|.......:..|. |.|  |...|......
Zfish   117 G---YSPTP--------------KSPSPKSPITGAVPYNNGGSRPVYN-NPA--GLYSHNNGNGA 161

  Fly   250 ATKELDDL-MASLSDFKVSNGTNGIGNGSHPQQHSSTVQHQTVTDYARPNKGSQQAHLTQTIEET 313
            ..|::..| :.|...|......|..||.:.....|..  ::.:.||..|....:|:...:.::..
Zfish   162 LPKQMSGLSLGSPHSFSPEPPVNSSGNRNGFDTQSDV--YRMLLDYEEPVSAPKQSGSFKYLQGI 224

  Fly   314 TIVEDSREDQLDSMLGNLQANMSRQGVNTVQKGCCNACEKPI--VGQVITALGKTWHPEHFTCNH 376
            ...||.....:|           |.||    :|..:..:.|:  :|..|||              
Zfish   225 LEAEDGGVSPVD-----------RSGV----RGLRSPVKSPVPKLGSPITA-------------- 260

  Fly   377 CSQELGTRNFFERDGFPYCE-PDYHNLFSPRCAYCNGAILDKCVTALDKTWHTEHFFCAQCGQQF 440
                            |... |...||  |:|..|...|:...|.|.||.               
Zfish   261 ----------------PLAPIPGLQNL--PQCTRCANGIVGVIVKARDKL--------------- 292

  Fly   441 GEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAIMENYISALNSQWHPDCFVCRDCRQPF-QGGSF 504
                                                        :|||||:|.||.... |.|.|
Zfish   293 --------------------------------------------YHPDCFMCDDCGLNLKQRGYF 313

  Fly   505 FDHEGLPYCETHYHAKRGSLCAGCSKPITGRCITAMF 541
            |..:.| |||||..|:        .:|..|..:.|::
Zfish   314 FIDDNL-YCETHAKAR--------VQPPEGYDVVAVY 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 7/54 (13%)
LIM2_Paxillin_like 407..458 CDD:188723 7/50 (14%)
LIM3_Paxillin_like 466..518 CDD:188724 18/52 (35%)
LIM4_Paxillin 525..576 CDD:188795 3/17 (18%)
pdlim4NP_001036161.1 PDZ_signaling 3..78 CDD:238492
DUF4749 146..233 CDD:292558 19/91 (21%)
LIM_RIL 274..326 CDD:188835 25/111 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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