DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and ablim3

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_021336718.1 Gene:ablim3 / 566821 ZFINID:ZDB-GENE-070112-1122 Length:690 Species:Danio rerio


Alignment Length:254 Identity:75/254 - (29%)
Similarity:111/254 - (43%) Gaps:33/254 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 MSRQGVNTVQKGC----------CNACEKPIVGQVITALGKTWHPEHFTCNHCSQELGTRNFFER 389
            ||...|...|..|          |..|.:...|:|:......:|.:.|||..|..:|....||::
Zfish     1 MSTSVVPYQQSSCSNERSSGPIHCFRCRELCKGEVVRVQHVHFHIKCFTCQVCGCDLAHSGFFQK 65

  Fly   390 DGFPYCEPDYHNLFSPRCAYCNGAILDKCVTALDKTWHTEHFFCAQCGQQF---------GEEGF 445
            .|...|..||..|:..:|..|...|..:.|:||.:|:|.:.|.|:.|.:.|         |:|..
Zfish    66 SGEYICTSDYQRLYGTKCDSCGDFISGEVVSALGRTYHPQCFVCSVCRKPFPIGDRVTFSGKECV 130

  Fly   446 HERDGKPYCR------NDYFEMFAPK-CNGCNRAIMENY-ISALNSQWHPDCFVCRDCRQPFQGG 502
            .::     |.      |:..::..|. |.||...|.:.. :.||..|||..||.|:.|..... |
Zfish   131 CQQ-----CSIKLVNPNEPIKIHGPSYCAGCKEEIKQGQSLLALEKQWHVSCFRCQTCGLVLT-G 189

  Fly   503 SFFDHEGLPYCETHYHAKRGSLCAGCSKPITGRCITAMFKKFHPEHFVCAFCLKQLNKG 561
            .:...:|:||||:.|||:.|..|..|.:.|:||.:.|..|.:||....||.|.....:|
Zfish   190 EYISKDGVPYCESDYHAQFGIKCETCDRYISGRVLEAGGKHYHPTCARCARCQMMFTEG 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 15/51 (29%)
LIM2_Paxillin_like 407..458 CDD:188723 16/65 (25%)
LIM3_Paxillin_like 466..518 CDD:188724 19/52 (37%)
LIM4_Paxillin 525..576 CDD:188795 13/37 (35%)
ablim3XP_021336718.1 LIM1_abLIM 24..75 CDD:188713 14/50 (28%)
LIM2_abLIM 80..135 CDD:188714 14/59 (24%)
LIM3_abLIM 153..204 CDD:188715 19/51 (37%)
LIM4_abLIM 212..267 CDD:188716 13/37 (35%)
AbLIM_anchor 295..654 CDD:318423
VHP 655..690 CDD:128458
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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