DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and pxnb

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_021334029.1 Gene:pxnb / 565130 ZFINID:ZDB-GENE-130530-697 Length:1197 Species:Danio rerio


Alignment Length:633 Identity:246/633 - (38%)
Similarity:318/633 - (50%) Gaps:161/633 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 LRGKAQPQVYQEHYSVETRSPTAGHDFNGSSTTPGYANQGSLPRQAAGASTGLSELDSLLQDLQ- 138
            |..:|||::|:|......||     |.:..:.|......|.|..|    |...|:||....:|: 
Zfish   598 LTSEAQPEIYEESIVAADRS-----DIHPDTHTESEMGDGLLEDQ----SDCRSDLDWADMELKM 653

  Fly   139 KIDVPVNYSTPVSKYNTMNSYATVEERPSVDSLLKELDNAHIYAVPNGSAHKSPTPGRHVTITVR 203
            ..:.|....||:::.:.|:...|....|.......:|...|:    .|:..:....| |:...:|
Zfish   654 AYEGPDGSMTPMTEASWMDDSLTPSSCPGTPDAQMDLPMLHM----AGTMDRISASG-HIKSVIR 713

  Fly   204 ETKTEKLTGP---DGPVGTVEEQIVQQKDSYTPNHAVPGQQVHQAYTSQATKELDDLMASLSDFK 265
            .||..:...|   ||        ::::|         .|..:.....|| .:.:::|...|...:
Zfish   714 RTKEIQNVHPMYRDG--------LIRRK---------MGPLIFHKSNSQ-DRLIEELQGKLGIAR 760

  Fly   266 VSNG---------TNGIGNGSHPQQHSSTVQHQTVTD-----------------------YARPN 298
            ....         |.|:...|:|::  |...|....|                       ..||.
Zfish   761 KEKAKKQQPDDWLTEGVIVMSNPKR--SREDHNRDVDKIIIPPESPLPQRKMILPPQSPPMPRPP 823

  Fly   299 KGSQQAHLTQTIE---------------------------------------ETTIV-------- 316
            ..:::......::                                       |..:|        
Zfish   824 PPAEEPKCPPVVKLAPAPLPPPPPPAPSPPPREPTPPPQPTLPPVPPKPPTPEPVVVPAPSPKPK 888

  Fly   317 --------------------------------------------EDSREDQLDSMLGNLQANMSR 337
                                                        ...:.::||:|||:||:::.:
Zfish   889 PAPPPSPIPPPAPVSPPKVLASVGCQTEYDPLFPPLQIMAQGKGPHGQANKLDNMLGSLQSDLHK 953

  Fly   338 QGVNTVQKGCCNACEKPIVGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNL 402
            .||.||.||.|.||.|||||||:||:|:|||||||.|.||.:|:|:||||||:|.||||.|||:|
Zfish   954 LGVQTVAKGVCGACSKPIVGQVVTAMGRTWHPEHFVCTHCQEEIGSRNFFEREGQPYCERDYHHL 1018

  Fly   403 FSPRCAYCNGAILDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCN 467
            |||||.||||.||||.|||||:|||.|||||||||..||.|||||:|||.|||.|||::|||||.
Zfish  1019 FSPRCYYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDLFAPKCG 1083

  Fly   468 GCNRAIMENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCSKPI 532
            ||.|||:|||||||:|.|||:|||||:|..||..||||:|:|.||||.||||:|||||:||.|||
Zfish  1084 GCARAILENYISALSSLWHPECFVCRECFTPFVNGSFFEHDGQPYCEVHYHARRGSLCSGCQKPI 1148

  Fly   533 TGRCITAMFKKFHPEHFVCAFCLKQLNKGTFKEQKDKPYCHTCFDKIF 580
            ||||||||.|||||||||||||||||||||||||.|||||..||.|:|
Zfish  1149 TGRCITAMGKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQGCFIKLF 1196

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 37/51 (73%)
LIM2_Paxillin_like 407..458 CDD:188723 39/50 (78%)
LIM3_Paxillin_like 466..518 CDD:188724 36/51 (71%)
LIM4_Paxillin 525..576 CDD:188795 44/50 (88%)
pxnbXP_021334029.1 Paxillin 96..272 CDD:308898
Atrophin-1 <178..684 CDD:331285 24/94 (26%)
LIM1_Paxillin_like 964..1016 CDD:259830 37/51 (73%)
LIM2_Paxillin_like 1023..1074 CDD:188723 39/50 (78%)
LIM3_Paxillin_like 1082..1134 CDD:188724 36/51 (71%)
LIM4_Paxillin 1141..1192 CDD:188795 44/50 (88%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583866
Domainoid 1 1.000 110 1.000 Domainoid score I6254
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 481 1.000 Inparanoid score I1422
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 1 1.000 - - otm26038
orthoMCL 1 0.900 - - OOG6_104097
Panther 1 1.100 - - LDO PTHR24216
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.760

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