Protein Alignment Pax and lims2

DIOPT Version :9

• Sequence 1: NP_001033913.1
• Gene: Pax / 35215
• FlyBaseID: FBgn0041789
• Length: 581
• Species: Drosophila melanogaster
• Sequence 2: XP_021334342.1
• Gene: lims2 / 553696
• ZFINID: ZDB-GENE-050522-56
• Length: 378
• Species: Danio rerio
• Alignment Length: 311
• Identity: 81/311 - (26%)
• Similarity: 134/311 - (43%)
• Gaps: 69/311 - (22%)

  Fly   334 NMSRQGVNTVQKGCCNACEKPI--VGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCE 396
            ||:    |.:....|..|:...  ..:::.:.|:.:|.:.|||..|.|:|....|:|.:|..|||
Zfish    47 NMT----NALANAVCERCKSSFSPTEKMVNSNGELYHEQCFTCAQCFQQLIQGLFYEFEGRKYCE 107

  Fly   397 PDYHNLFSPRCAYCNGAILDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRN----- 456
            .|:..||:|.|..|...::.:.:.|::.:||.:.|.|..|.....:.||.:..|:|.||:
Zfish   108 HDFQMLFAPCCHQCGEFVVGRVIKAMNSSWHPDCFCCEVCEAVLADVGFVKSGGRPLCRSCHSRQ 172

  Fly   457 ------------------------------DYF------------------EMF---------AP 464
                                          |:|                  |::         .|
Zfish   173 KALSLGKHVCQKCLCVVEEPLMYRSDPYHPDHFNCSHCGKELTADARELKGELYCLPCHDKLGVP 237

  Fly   465 KCNGCNRAIMENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCS 529
            .|..|.|.:....::|:..|||.:.|||..|.:||.|...::.:||.||||||:...|.:|..|:
Zfish   238 ICGACRRPVEGRVVNAMGKQWHVEHFVCVKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFQCN 302

  Fly   530 KPITGRCITAMFKKFHPEHFVCAFCLKQLN-KGTFKEQKDKPYCHTCFDKI 579
            :.|.|..::|:.|.:....|.|:.|..:|. |..|.|...||.|..|::::
Zfish   303 RVIEGDVVSALNKAWCVRCFSCSTCTSRLTLKDKFVEIDLKPVCKHCYERM 353

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pax	NP_001033913.1	LIM1_Paxillin_like	348..400	CDD:259830	17/53 (32%)
		LIM2_Paxillin_like	407..458	CDD:188723	14/85 (16%)
		LIM3_Paxillin_like	466..518	CDD:188724	21/51 (41%)
		LIM4_Paxillin	525..576	CDD:188795	16/51 (31%)
lims2	XP_021334342.1	LIM1_PINCH	57..115	CDD:188717	18/57 (32%)
		LIM2_PINCH	118..169	CDD:188718	14/50 (28%)
		LIM3_PINCH	182..231	CDD:188719	3/48 (6%)
		LIM4_PINCH	237..290	CDD:188720	21/52 (40%)
		LIM5_PINCH	298..351	CDD:188721	17/52 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1593918at2759
OrthoFinder	1	1.000	-	-		FOG0000055
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X39
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	5	4.920