DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and pdlim1

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_001017870.1 Gene:pdlim1 / 550568 ZFINID:ZDB-GENE-030131-5227 Length:322 Species:Danio rerio


Alignment Length:221 Identity:43/221 - (19%)
Similarity:89/221 - (40%) Gaps:20/221 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 ITVRETKTEKLTGPDGPVGTVEEQIVQQKDSYTPNHAVPGQQVHQA--YTSQATKELDDLMASLS 262
            :.:.:|.|::    :..:|:...:.....:|.:| ..|..|..:.|  |:|:..|..:..:..:.
Zfish   103 MNLAKTNTQE----EKHIGSAHNRSAMPFNSASP-RVVTNQYNNPAGLYSSENIKNFNSAVDEVQ 162

  Fly   263 DFKVSNGTNGIGNGSHPQQHSSTVQ-----HQTVTDYARPNKGSQQAHLTQTIEETTIVEDSRED 322
            ....|:..:...:.|.|....:.:.     ::.:.:....|:..:|:...:.::|.....||.: 
Zfish   163 TTATSSEASRNSDPSKPGHTKAAIAADSEVYKMLQENQESNEPPRQSASFKVLQEILETGDSEK- 226

  Fly   323 QLDSMLGNLQANMSRQGV---NTVQKGCCNACEKPIVGQVITALGKTWHPEHFTCNHCSQELGTR 384
              .|...:::|..::.|.   |..:...|:.|...|||.::....|..|||.:.|..|...|..:
Zfish   227 --PSGFRSVKAPTTKIGASVGNPEKLSLCDKCGSGIVGMIVKLRDKFRHPECYVCTDCGINLKQK 289

  Fly   385 -NFFERDGFPYCEPDYHNLFSPRCAY 409
             :||..|.. |||.......:|...|
Zfish   290 GHFFVEDQI-YCEKHARERITPPEGY 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 18/52 (35%)
LIM2_Paxillin_like 407..458 CDD:188723 1/3 (33%)
LIM3_Paxillin_like 466..518 CDD:188724
LIM4_Paxillin 525..576 CDD:188795
pdlim1NP_001017870.1 PDZ_signaling 2..80 CDD:238492
DUF4749 133..223 CDD:292558 12/89 (13%)
LIM_CLP36 253..304 CDD:188832 18/51 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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