DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment Pax and Lims1

DIOPT Version :9

Sequence 1:	NP_001033913.1	Gene:	Pax / 35215	FlyBaseID:	FBgn0041789	Length:	581	Species:	Drosophila melanogaster
Sequence 2:	XP_017457250.1	Gene:	Lims1 / 499443	RGDID:	1560732	Length:	407	Species:	Rattus norvegicus

Alignment Length:	240	Identity:	80/240 - (33%)
Similarity:	123/240 - (51%)	Gaps:	9/240 - (3%)

- Green bases have known domain annotations that are detailed below.

  Fly   347 CCNACEKPIVGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNLFSPR----- 406
            ||:.|.:.|:|:||.|:..:||||.|.|:.|.:.|....|.:..|...|.| .||....|
  Rat   141 CCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRP-CHNREKARGLGKY 204

  Fly   407 -CAYCNGAILDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCN 470
             |..|:..|.::.:...:..:|.:||.||.||::...:. .|..|:.||...:.:|..|.|..|.
  Rat   205 ICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVPICGACR 268

  Fly   471 RAIMENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCSKPITGR 535
            |.|....::|:..|||.:.|||..|.:||.|...::.:||.||||||:...|.:|..|::.|.|.
  Rat   269 RPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGD 333

  Fly   536 CITAMFKKFHPEHFVCAFCLKQLN-KGTFKEQKDKPYCHTCFDKI 579
            .::|:.|.:....|.|:.|..:|. |..|.....||.|..|::|:
  Rat   334 VVSALNKAWCVSCFACSTCNTKLTLKDKFVAIDLKPVCKYCYEKM 378

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Pax	NP_001033913.1	LIM1_Paxillin_like	348..400	CDD:259830	19/51 (37%)
		LIM2_Paxillin_like	407..458	CDD:188723	14/50 (28%)
		LIM3_Paxillin_like	466..518	CDD:188724	22/51 (43%)
		LIM4_Paxillin	525..576	CDD:188795	15/51 (29%)
Lims1	XP_017457250.1	None

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1593918at2759
OrthoFinder	1	1.000	-	-		FOG0000055
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X39
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.920