DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and Ldb3

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_006252699.3 Gene:Ldb3 / 498587 RGDID:1564875 Length:771 Species:Rattus norvegicus


Alignment Length:603 Identity:140/603 - (23%)
Similarity:205/603 - (33%) Gaps:192/603 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 GTVQPKHQALQQQQFVDNTPGYGSLRGKAQPQVYQEH---YSVETRSPTAGHDFNGSSTTPGYAN 112
            |:|.||                 .|.|.:||::|...   ||.||....|            ...
  Rat   224 GSVSPK-----------------VLPGPSQPRLYNNPIGLYSAETLREMA------------QMY 259

  Fly   113 QGSLPRQAAGASTGLSELDSLLQDLQKIDVPVNYSTPVSKYNTMNSYATV---EERPSVDS---- 170
            |.||..:|:||  ||     |...|...|:.|:.::||        |..|   :.:|..::    
  Rat   260 QMSLRGKASGA--GL-----LGGSLPVKDLAVDSASPV--------YQAVIKTQSKPEDEADEWA 309

  Fly   171 ------------LLKELDNAHIYAVPNGSA-HKSPTPGRHVTITVRETKTEKLTGP--------- 213
                        :|.::........|:..| .:|.||..|..:.     |.:.|.|         
  Rat   310 RRSSNLQSRSFRILAQMTGTEYMQDPDEEALRRSSTPIEHAPVC-----TSQATSPLLPASAPSP 369

  Fly   214 -------------------------DGPVGTVEEQIVQQKDSYTPNHAV-PGQQVHQAYT----S 248
                                     .||..:..|....|..:|:|..|. |....|.:|:    :
  Rat   370 AAASPIAASPTLATAAAAHAVAASAAGPASSPVENPRPQASAYSPAAATSPAPAAHTSYSEGPAA 434

  Fly   249 QATKELDDLMASL----------SDFKVSNGTN----------------------------GIGN 275
            .|.|......||:          |.:..|.|.|                            ....
  Rat   435 PAPKPRVVTTASIRPSVYQPVPASPYSPSPGANYSPTPYTPSPAPAYTPSPAPTYTPSPAPTYSP 499

  Fly   276 GSHPQQHSSTVQHQTVTDYARPNKGSQQAHLTQTIEETTIVEDSREDQLDSMLGNLQANMSRQGV 340
            ...|....|...:...|..|..:.|..::    ......:.:||...:...  |....::|:|  
  Rat   500 SPAPAYTPSPAPNYNPTPSAAYSGGPSES----ASRPPWVTDDSFSQKFAP--GKSTTSVSKQ-- 556

  Fly   341 NTVQKGC--------------------------------CNACEKPIVGQVITALGKTWHPEHFT 373
             |:.:|.                                |..|...|.|..:.|:|::||||.|.
  Rat   557 -TLPRGAPAYNPTGPQVTPLARGTFQRAERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFN 620

  Fly   374 CNHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCNGAILDKCVTALDKTWHTEHFFCAQCGQ 438
            |.:|...|....|.|.....|||..|...|:|.||.||..|:.:.:.||.:||||..|.||.|.:
  Rat   621 CAYCKTSLADVCFVEEQNNVYCERCYEQFFAPICAKCNTKIMGEVMHALRQTWHTTCFICAACKK 685

  Fly   439 QFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAIM--ENYISALNSQWHPDCFVCRDCRQPFQG 501
            .||...||..||:|||..||..:|:.||:||:..:.  :.:|.||...||..||:|..|....:|
  Rat   686 PFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEG 750

  Fly   502 GSFFDHEGLPYCETHYHA 519
            ..|:..:..|.|:.|.||
  Rat   751 QPFYSKKDKPLCKKHAHA 768

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 19/51 (37%)
LIM2_Paxillin_like 407..458 CDD:188723 24/50 (48%)
LIM3_Paxillin_like 466..518 CDD:188724 17/53 (32%)
LIM4_Paxillin 525..576 CDD:188795
Ldb3XP_006252699.3 PDZ_signaling 50..126 CDD:238492
DUF4749 240..341 CDD:406377 26/127 (20%)
PHA03247 <426..576 CDD:223021 21/158 (13%)
LIM1_ZASP_Cypher 595..646 CDD:188838 19/50 (38%)
LIM2_Enigma_like 654..705 CDD:188748 24/50 (48%)
LIM3_ZASP_Cypher 713..767 CDD:188844 17/53 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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