DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and pxna

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_963882.1 Gene:pxna / 399546 ZFINID:ZDB-GENE-040105-1 Length:533 Species:Danio rerio


Alignment Length:632 Identity:278/632 - (43%)
Similarity:338/632 - (53%) Gaps:186/632 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 ALLADLQNS----------------------------VPGQPQQPQPQYGTV--------QPKHQ 58
            ||||||:::                            |...|:...|...|:        :.|| 
Zfish     6 ALLADLESTTSHISKQGVFLPEETPYSCPRGSDSYQDVSSPPRVISPPAETLNGSWVEKPESKH- 69

  Fly    59 ALQQQQFVDNTPGYGSLRGKAQPQVYQ---EH-YSVETR-----SPTAGHDFNGSSTTPGYANQG 114
                    .:|..:.|....:.|:|.|   || ||...:     ||||  ..|.|          
Zfish    70 --------SSTQSFNSAPKSSSPRVSQSEEEHVYSFPNKQKSIESPTA--VMNSS---------- 114

  Fly   115 SLPRQAAGASTGLSELDSLLQDLQKIDVPVNYSTP---------------VSKYNTMNSYATV-- 162
                    ..:.|||||.||.:|.    .|.:|||               ..:|...|..::|  
Zfish   115 --------LGSNLSELDRLLLELN----AVQHSTPSFPAEETYPPKPASNTQRYVPENGVSSVVK 167

  Fly   163 -------------------EERPSVDSLLKELDNAHIYAVPNGSAHKSPTPGRHVTITVRETKTE 208
                               |.||||:|||.:|:::...|||..|.                ....
Zfish   168 AAPPKIEKPKRNIPAKVIEEVRPSVESLLNQLESSVPAAVPVSSV----------------PMVS 216

  Fly   209 KLTGPDGPVGTVEEQIVQQKDSYTPNHAVPGQQVHQAYTSQATKELDDLMASLSDFKVSNGTNGI 273
            :|.|       |:|:             .|.||..:...|.||:|||:||||||||||.:.....
Zfish   217 ELRG-------VQEE-------------TPAQQQARISASSATRELDELMASLSDFKVQSNIMAQ 261

  Fly   274 GNGSHPQQHSSTVQHQTVTDYARPNKGSQQAHLTQTIEETTIVEDSREDQLDSMLGNLQANMSRQ 338
            |..|     .::|          |.:|                     ::||:|||:||::::|.
Zfish   262 GKSS-----PTSV----------PKQG---------------------NKLDNMLGSLQSDLNRL 290

  Fly   339 GVNTVQKGCCNACEKPIVGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNLF 403
            ||.||.||.|.||:|||.|||:||:|:|||||||.|..|.:|:|:||||||||.||||.|||:||
Zfish   291 GVQTVAKGVCGACKKPIAGQVVTAMGRTWHPEHFVCTQCQEEIGSRNFFERDGQPYCEKDYHSLF 355

  Fly   404 SPRCAYCNGAILDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNG 468
            ||||.||:|.||||.|||||||||.|||||||||..||.|||||::||.|||.|||:||||||.|
Zfish   356 SPRCYYCSGPILDKVVTALDKTWHPEHFFCAQCGSFFGPEGFHEKEGKAYCRKDYFDMFAPKCGG 420

  Fly   469 CNRAIMENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCSKPIT 533
            |.|||:|||||||||.|||:|||||:|..||..||||:|||.||||.|||.:|||||:||.||||
Zfish   421 CARAILENYISALNSLWHPECFVCRECFTPFVNGSFFEHEGQPYCEAHYHERRGSLCSGCQKPIT 485

  Fly   534 GRCITAMFKKFHPEHFVCAFCLKQLNKGTFKEQKDKPYCHTCFDKIF 580
            |||||||.|||||||||||||||||||||||||.|||||.:||.|:|
Zfish   486 GRCITAMGKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQSCFVKLF 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 36/51 (71%)
LIM2_Paxillin_like 407..458 CDD:188723 38/50 (76%)
LIM3_Paxillin_like 466..518 CDD:188724 38/51 (75%)
LIM4_Paxillin 525..576 CDD:188795 44/50 (88%)
pxnaNP_963882.1 Paxillin 54..229 CDD:281527 51/243 (21%)
LIM1_Paxillin_like 300..352 CDD:259830 36/51 (71%)
LIM2_Paxillin 359..410 CDD:188791 38/50 (76%)
LIM3_Paxillin 418..470 CDD:188793 38/51 (75%)
LIM4_Paxillin 477..528 CDD:188795 44/50 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583865
Domainoid 1 1.000 110 1.000 Domainoid score I6254
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H136149
Inparanoid 1 1.050 481 1.000 Inparanoid score I1422
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 1 1.000 - - otm26038
orthoMCL 1 0.900 - - OOG6_104097
Panther 1 1.100 - - O PTHR24216
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.760

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