DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pax and pdlim5b

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_956490.1 Gene:pdlim5b / 393165 ZFINID:ZDB-GENE-040426-908 Length:628 Species:Danio rerio


Alignment Length:547 Identity:132/547 - (24%)
Similarity:216/547 - (39%) Gaps:95/547 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 GARQPYRTARSKGILPGYALLADLQNSVPGQPQQ--PQPQYGTVQPKHQALQQQQFVDNTPGYGS 74
            ||....|:.......|..::.:......|..|.|  |||.:    |...:.|:.|...|:....:
Zfish   133 GATNTVRSVSPSPAAPKASIPSASSAFTPAAPSQQPPQPPF----PLAGSAQRSQPSPNSISSPA 193

  Fly    75 LRGKAQPQVYQEHYSVETRSPTAGHDFNGSSTTPGYANQGSLPRQAAGASTGLSELDSLLQDLQK 139
            .....:|...:..::..:.:.::|.......|.|.       |.....::|..|.:         
Zfish   194 SNSAPKPSSGRSPFANSSSASSSGSSSPARVTAPA-------PAPPPASATPHSSV--------- 242

  Fly   140 IDVPVNYSTPVSKYNTMNS--YATVEERPSVDSLLKELDNAHIYAVPNGSAHKSPTPGRHVTITV 202
                  |:||:|.|:..|:  .|..:.|..::|..::         .||:|.|          .|
Zfish   243 ------YNTPISLYSNQNACEVAMGQRRGLMESKGEQ---------QNGTARK----------PV 282

  Fly   203 RETKTEKLTGPDGPVGTV-EEQIVQQKDSYTPNHA------------VPGQQVHQAYTSQATKE- 253
            .||:...::    |:... ::::::..:.:.|...            :.|.:..||..|:..|. 
Zfish   283 LETEVNHVS----PLSDASKKRLIEDTEDWHPRTGTTQSRSFRILAQITGTENDQAQESRPGKNE 343

  Fly   254 -LDDLM----ASLSDFKVSNGTNGI---GNG--SHPQQHSSTVQHQTVTDYAR----------PN 298
             ::||.    :|.|.|.:|....|.   |||  :.|.:|..| ...:...:.|          |:
Zfish   344 AVEDLQPSSHSSSSVFTMSKSPAGATRQGNGISAAPAKHWQT-SSSSSAGFPRSGGAGVAPTGPS 407

  Fly   299 KGSQQAHLTQTIEETTIVEDSREDQLDSMLGNLQANMSRQGVNTVQKGCCNACEKPIVGQVITAL 363
            .|...:.......|..:.:....||.:|::  .:|.....|..|..   |..|...|.|..:.|:
Zfish   408 VGRGVSSSVPKGPERPVPQPHPRDQDESVV--QRAEHMPAGTRTPM---CAHCNTVIRGPFLVAM 467

  Fly   364 GKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCNGAILDKCVTALDKTWHT 428
            ||:||.:.|||:||...|....|.|..|..||...|....:|.|..|:..|:.:.:.||.:|||.
Zfish   468 GKSWHKDEFTCSHCRSSLADVGFVEERGSVYCVLCYEEFLAPTCFQCHKKIIGEVINALKQTWHV 532

  Fly   429 EHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAIM--ENYISALNSQWHPDCFV 491
            ..|.||.|.|..|...||..|.:|||..||:.:|...|:||:..|.  :.::.||...||..|||
Zfish   533 NCFLCASCKQPIGNNTFHLEDRQPYCEKDYYSLFGTGCHGCDFPIEAGDKFLEALGFTWHDTCFV 597

  Fly   492 CRDCRQPFQGGSFFDHEGLPYCETHYH 518
            |..|....:|.:||..:..|.|:.|.|
Zfish   598 CAVCSTSLEGQTFFSKKDKPLCKKHAH 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 20/51 (39%)
LIM2_Paxillin_like 407..458 CDD:188723 20/50 (40%)
LIM3_Paxillin_like 466..518 CDD:188724 19/53 (36%)
LIM4_Paxillin 525..576 CDD:188795
pdlim5bNP_956490.1 PDZ_signaling 11..80 CDD:238492
DUF4749 243..335 CDD:292558 20/114 (18%)
LIM1_Enigma_like 452..503 CDD:188747 20/50 (40%)
LIM2_Enigma_like 511..562 CDD:188748 20/50 (40%)
LIM 570..624 CDD:295319 19/53 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.