DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and Sox14

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster


Alignment Length:672 Identity:108/672 - (16%)
Similarity:192/672 - (28%) Gaps:270/672 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PGARQPYRTARSKGILPGYALLAD----LQNSVPGQPQQPQPQYGTVQPKHQALQQQQFVDNTPG 71
            |||::    .:|:..:...|.:|.    :..:.|..|:.|:|:   ....|.....|.| ...|.
  Fly    74 PGAQK----TQSQAAITHPAAVASPSAPVAAAAPKTPKTPEPR---STHTHTHTHSQHF-SPPPR 130

  Fly    72 YGSLRGKAQPQVYQEHYSVETRSPT-AGHDFNGSSTTPGYANQGSLPRQAAGASTGLSELDSLLQ 135
            ...:.|:              |||: :||:.                      :..:..:||.|.
  Fly   131 ESEMDGE--------------RSPSHSGHEM----------------------TLSMDGIDSSLV 159

  Fly   136 DLQKIDVPVNYSTPVS------KYN------TMNSYA--TVEERPSVDSLLKELDNA-------- 178
             .....||||.|||.|      |::      .||::.  :..||..:.....:|.||        
  Fly   160 -FGSARVPVNSSTPYSDATRTKKHSPGHIKRPMNAFMVWSQMERRKICERTPDLHNAEISKELGR 223

  Fly   179 -----------------------HIYAVPN-----------------------GSAHKSPTPGRH 197
                                   |:...||                       |...::.|...:
  Fly   224 RWQLLSKDDKQPYIIEAEKLRKLHMIEYPNYKYRPQKKQTRSPGSLKPNQDADGCEARNDTTNNN 288

  Fly   198 VTITV--------------RETKT------------------------------EKLTGPDGPVG 218
            .::|.              |.|.|                              |:|...|..:.
  Fly   289 NSLTTLAINGTTTAGRKSKRSTSTCQSGSASKRLRNDSGDTSSKPKYEVKMESAEQLNSADIILP 353

  Fly   219 TVEEQIVQQKDSYTP----NHAVPGQQVHQAYTSQATKELDDLMASLSDFKV----SNGTNGIGN 275
            :.:..|..|...|.|    ::|...:::|...:|...:..::|...::.|..    .|..:.:|.
  Fly   354 SADNLISYQSSEYLPLSTLSNADCDEKLHSELSSGPLESRENLSEVVNRFLPLFLGGNEDSQLGV 418

  Fly   276 GSHPQQHSSTVQHQTVTDYARPNKGSQQAHLTQTIEETTIVEDSRE--DQLDSMLGNLQANMSRQ 338
            .|..|.     ||         |:....|.|...|.:.:.:.|..|  :::...|..|:.|.|..
  Fly   419 SSLTQS-----QH---------NQSDPTAGLMDNISDISPINDREELTEEVMRYLPYLEVNPSSD 469

  Fly   339 GVNTVQKGCCNACEKPIVGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNLF 403
            |: |::....:...||:...|..:       |....|..:....:..      .|...||.|:.|
  Fly   470 GL-TLKVESSSLLGKPLNEPVFDS-------EDNIVNDANLHSASHQ------IPPYVPDSHDCF 520

  Fly   404 SPRCAYCNGAILDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPK--- 465
            :..|.                                |:...|:.:         ||:..|:   
  Fly   521 AEDCG--------------------------------GDSSSHQVE---------FEVVRPQTVT 544

  Fly   466 ----CN--------GCNRAIMENYISALNSQWHPDCFVCRDCRQP---FQGGSFFDHEGLPYCET 515
                |.        |......:::.:..::....:|.:......|   |.|.||.:.:.:     
  Fly   545 MTMTCTLPYGGPDAGHTTFQADDFNAIPSAAEDSECSILTTSNSPQIGFNGSSFVEADAI----- 604

  Fly   516 HYHAKRGSLCAGCSKPITGRCI 537
                  ||.|....:..||..|
  Fly   605 ------GSTCTYAQQDYTGSVI 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 8/51 (16%)
LIM2_Paxillin_like 407..458 CDD:188723 3/50 (6%)
LIM3_Paxillin_like 466..518 CDD:188724 8/62 (13%)
LIM4_Paxillin 525..576 CDD:188795 4/13 (31%)
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684 10/70 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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