DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Pax and Wtip

DIOPT Version :9

Sequence 1:	NP_001033913.1	Gene:	Pax / 35215	FlyBaseID:	FBgn0041789	Length:	581	Species:	Drosophila melanogaster
Sequence 2:	XP_008757482.2	Gene:	Wtip / 361552	RGDID:	1306411	Length:	397	Species:	Rattus norvegicus

Alignment Length:	176	Identity:	54/176 - (30%)
Similarity:	78/176 - (44%)	Gaps:	18/176 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly   398 DYHNLFSPRCAYCNGAILD--KCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDY-- 458
            ||..:    |..|...|..  :...|:...:||:.|.|..||::...:.|:....|.||:.|:
  Rat   187 DYFGI----CIKCGLGIYGARQACQAMGSLYHTDCFICDSCGRRLRGKAFYNVGEKVYCQEDFLY 247

  Fly   459 --FEMFAPKCNGCNRAIMENYISALNSQWHPDCFVCRDCRQPFQGGSF-FDHEGLPYCETHYHAK 520
              |:..|.||:.|...|||..:.||...:||.||.|..|.:...|..| .|.|...||...||..
  Rat   248 SGFQQTADKCSVCGHLIMEMILQALGKSYHPGCFRCSVCNECLDGVPFTVDVENNIYCVRDYHTV 312

  Fly   521 RGSLCAGCSKPI-------TGRCITAMFKKFHPEHFVCAFCLKQLN 559
            ....||.|::||       |...:.:|.:.:|.|.:.|..|..||:
  Rat   313 FAPKCASCARPILPAQGCETTIRVVSMDRDYHVECYHCEDCGMQLS 358

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Pax	NP_001033913.1	LIM1_Paxillin_like	348..400	CDD:259830	1/1 (100%)
		LIM2_Paxillin_like	407..458	CDD:188723	14/52 (27%)
		LIM3_Paxillin_like	466..518	CDD:188724	19/52 (37%)
		LIM4_Paxillin	525..576	CDD:188795	13/42 (31%)
Wtip	XP_008757482.2	PRK07003	<23..>185	CDD:235906
		LIM1_Ajuba_like	192..245	CDD:188738	14/52 (27%)
		LIM2_Ajuba_like	257..309	CDD:188741	19/51 (37%)
		LIM3_Ajuba_like	317..378	CDD:188822	13/42 (31%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910