DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and Pxn

DIOPT Version :10

Sequence 1:NP_523601.2 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_038945530.1 Gene:Pxn / 360820 RGDID:1305759 Length:1125 Species:Rattus norvegicus


Alignment Length:646 Identity:266/646 - (41%)
Similarity:335/646 - (51%) Gaps:125/646 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 QPQPQYGT-------VQPKHQALQQQQFVDNTPGYGSLRGKAQPQVYQEHYSVETRSPTAGH--- 99
            :|:..:|.       ::|...|:.:|..:.:|.......| .|.:|..|...:.:..|..||   
  Rat   494 KPEIPHGVTYSFQEGIEPPAVAVDRQAVLPDTWALTQECG-LQERVQSEPGGLGSSCPALGHKEQ 557

  Fly   100 -----DFNGSSTTPGYA-------------------NQGSLPRQAAGASTGLSELDSLLQDLQKI 140
                 .:.|....|..|                   .|..|.|..|..:...||..|....::.:
  Rat   558 LGGKRPWKGGLGGPTEALENPGKPEGSMEAALEPRKEQPELSRAMALGTPSTSERISTSGQIRSV 622

  Fly   141 DVPVNYSTPVSKYNTMN---------SYATVEERPSVDSLLKELD---NAHIYAVPNGSAHKSPT 193
               :..|......:.|:         ..||:...||.:.|:.||.   ...:.|.....|.....
  Rat   623 ---IRRSRETGHVHPMSREPSPRRRLDPATLSRNPSQEQLIAELQGRLGIQLAAEEEAGASAQDW 684

  Fly   194 PGRHVTITVRETKTEKLTGPDG--PVGTVEEQIVQQKDS----------YTPNHAVPGQQVHQAY 246
            ....|.|||:         |.|  ..|.:.|::|...||          .:|....|..|.|.. 
  Rat   685 LTEGVVITVQ---------PRGRQAGGQLVEKVVYPPDSPIPLRRTTSVVSPPPPAPLLQNHPD- 739

  Fly   247 TSQATKELDDLMASLS---DFKVSNGTNGIGN-GSHPQQHS-------STVQHQTVTDYARPNKG 300
            ||.::..|...:.:.|   ....|:.::|:.. |..||:..       ::|.| ||.........
  Rat   740 TSASSSPLQPSLPTPSCPGPLAGSSASSGVQTAGEKPQEEGGRGPPGLTSVPH-TVRSVGCQTNE 803

  Fly   301 SQQAH--LTQTIEETTIVE---------DSRE------------------------------DQL 324
            ....|  ..|.:|:...||         .||:                              .||
  Rat   804 DPLFHPMQMQGLEQRVDVERQWAAGWPPSSRQSSPEGQDEGGFMAQGKTGSSSPPGGLSKPGSQL 868

  Fly   325 DSMLGNLQANMSRQGVNTVQKGCCNACEKPIVGQVITALGKTWHPEHFTCNHCSQELGTRNFFER 389
            |||||:||:::::.||.||.||.|.||:|||.|||:||:|||||||||.|.||.:|:|:||||||
  Rat   869 DSMLGSLQSDLNKLGVATVAKGVCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFER 933

  Fly   390 DGFPYCEPDYHNLFSPRCAYCNGAILDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYC 454
            ||.||||.|||:||||||.||||.||||.|||||:|||.|||||||||..||.|||||:|||.||
  Rat   934 DGQPYCEKDYHSLFSPRCYYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYC 998

  Fly   455 RNDYFEMFAPKCNGCNRAIMENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHA 519
            |.|||:||||||.||.|||:||||||||:.|||:|||||:|..||..||||:|:|.||||.|||.
  Rat   999 RKDYFDMFAPKCGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFEHDGQPYCEVHYHE 1063

  Fly   520 KRGSLCAGCSKPITGRCITAMFKKFHPEHFVCAFCLKQLNKGTFKEQKDKPYCHTCFDKIF 580
            :|||||:||.|||||||||||.|||||||||||||||||||||||||.|||||.:||.|:|
  Rat  1064 RRGSLCSGCQKPITGRCITAMAKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQSCFLKLF 1124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_523601.2 LIM1_Paxillin_like 348..400 CDD:259830 38/51 (75%)
LIM2_Paxillin_like 407..458 CDD:188723 39/50 (78%)
LIM3_Paxillin_like 466..518 CDD:188724 36/51 (71%)
LIM4_Paxillin 525..576 CDD:188795 44/50 (88%)
PxnXP_038945530.1 Paxillin 121..320 CDD:460962
DUF5585 <410..806 CDD:465521 62/326 (19%)
LIM1_Paxillin_like 892..944 CDD:259830 38/51 (75%)
LIM2_Paxillin 951..1002 CDD:188791 39/50 (78%)
LIM3_Paxillin_like 1010..1062 CDD:188724 36/51 (71%)
LIM4_Paxillin 1069..1120 CDD:188795 44/50 (88%)
Blue background indicates that the domain is not in the aligned region.

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