Protein Alignment Pax and Lima1

DIOPT Version :9

• Sequence 1: NP_001033913.1
• Gene: Pax / 35215
• FlyBaseID: FBgn0041789
• Length: 581
• Species: Drosophila melanogaster
• Sequence 2: XP_006257416.1
• Gene: Lima1 / 300228
• RGDID: 1564050
• Length: 773
• Species: Rattus norvegicus
• Alignment Length: 556
• Identity: 104/556 - (18%)
• Similarity: 176/556 - (31%)
• Gaps: 134/556 - (24%)

  Fly    80 QPQVYQEHYSVETRSPTAGHDFNGSSTTPGYANQGSLPRQAAGASTGL---SELDSLLQDLQKID 141
            ||.|..|  ||:....|   .||....|       ||..:.......|   ::..::::...|..
  Rat     8 QPTVVSE--SVDKMEST---PFNRRQWT-------SLSLRVTAKELSLVNKNKSSTIVEIFSKYQ 60

  Fly   142 VPVNYSTPVSKYNTMNSYATVEERPSVDSLLKELDN------AHIYAVPNGSA---HKSPTPGRH 197
            .....:....|.|...|......|.::..|.|:.:|      :|..::||.|:   |.:..|...
  Rat    61 KAAEEANMERKKNNTESLPQHFRRGTLSVLKKKWENPVAGAESHTDSLPNSSSDGGHTADHPPAE 125

  Fly   198 VTITV---RETKTEKLTGPDGPVGTVEEQIVQQKDSYTPNHAVPGQQVHQAYTSQATKELDDLMA 259
            ||...   .....|:.|.|....|:..|.:.|.:        .|..:....:.:|||:.
  Rat   126 VTAKAAPGARADREEHTQPRSRFGSRPEAVTQCR--------YPRSEDSHDFKAQATES------ 176

  Fly   260 SLSDFKVSNGTNGIGNGSH----PQQHSSTVQHQTVTDYARP--------NKGSQQAHLT----- 307
                   .|..|.:|:..|    |:...:|.....:..|..|        .||....:.:
  Rat   177 -------QNMENCLGDSRHEAEKPEMSENTETSGKIEKYNVPLNRLKMMFEKGEHSQNKSPWTQG 234

  Fly   308 -----QTIEETTIVEDSRE---DQLDSMLGNLQANMSRQGVNTVQKGCCNACEKPIVGQVITALG 364
                 :.:.|.:...|..|   ..|.|...|.:.|.|::.:...:  ......|..:.:...|:.
  Rat   235 RNAGGRRLSENSCSLDDLEIGAGHLSSSAFNSEKNESKRNLELPR--LSETSIKDRMAKYQAAVS 297

  Fly   365 KTWHPEHFTCNHCSQELGTRNFFERDGFP----YCEPDYHNLFSPRCAYCNGAILDKCVTALDKT 425
            |...|..:.......|..|..:.:::..|    .|  ..|...|...|..|..:... |.|.|.|
  Rat   298 KQSSPASYASELKPSESKTHKWEQKENVPPGPEAC--SIHQEGSKVSATENSLVAHP-VPAEDDT 359

  Fly   426 WHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAP-------------KCNGCNRAI--ME 475
                   |...|:...::..:.:...|..|.......:|             .|..|.:.:  ||
  Rat   360 -------CNSQGRSEAQQPIYTKPLSPDARTSSLPESSPSKTAKKFQAPARESCVECQKTVYPME 417

  Fly   476 NYISALNSQ-WHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYH---AKRGSLCAGCSKPITGRC 536
            ..::  |.| :|..||.|..|......|::....|..||:.|::   ..:|:...|..
  Rat   418 RLLA--NQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG------- 473

  Fly   537 ITAMFKKFHPEHFVCAFCLKQL--NKGTFKEQKDKP 570
                    |.:|       |.|  :||..:|...:|
  Rat   474 --------HKQH-------KDLWASKGENEETLGRP 494

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pax	NP_001033913.1	LIM1_Paxillin_like	348..400	CDD:259830	8/55 (15%)
		LIM2_Paxillin_like	407..458	CDD:188723	10/50 (20%)
		LIM3_Paxillin_like	466..518	CDD:188724	16/54 (30%)
		LIM4_Paxillin	525..576	CDD:188795	9/48 (19%)
Lima1	XP_006257416.1	LIM_Eplin_alpha_beta	406..458	CDD:188869	15/53 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910