DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment Pax and Csrp1

DIOPT Version :9

Sequence 1:	NP_001033913.1	Gene:	Pax / 35215	FlyBaseID:	FBgn0041789	Length:	581	Species:	Drosophila melanogaster
Sequence 2:	NP_058844.1	Gene:	Csrp1 / 29276	RGDID:	62053	Length:	193	Species:	Rattus norvegicus

Alignment Length:	170	Identity:	35/170 - (20%)
Similarity:	57/170 - (33%)	Gaps:	53/170 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly   348 CNACEKPI-VGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNLFSP------ 405
            |..|:|.: ..:.:...|.::|...|.|..|.:.|.:..........||:..|...:.|
  Rat    10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYG 74

  Fly   406 -------------------------------------------RCAYCNGAI--LDKCVTALDKT 425
                                                       ||..|:.|:  .:|.:.| .|:
  Rat    75 QGAGTLSMDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGA-GKS 138

  Fly   426 WHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPK 465
            ||...|.||:||:........::||:.||:..|.:.|.||
  Rat   139 WHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPK 178

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Pax	NP_001033913.1	LIM1_Paxillin_like	348..400	CDD:259830	11/52 (21%)
		LIM2_Paxillin_like	407..458	CDD:188723	17/52 (33%)
		LIM3_Paxillin_like	466..518	CDD:188724	35/170 (21%)
		LIM4_Paxillin	525..576	CDD:188795
Csrp1	NP_058844.1	LIM1_CRP1	8..63	CDD:188863	11/52 (21%)
		Nuclear localization signal. /evidence=ECO:0000255	64..69		0/4 (0%)
		LIM2_CRP	119..172	CDD:188787	17/53 (32%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910