DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and Pdlim7

DIOPT Version :10

Sequence 1:NP_523601.2 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_038951356.1 Gene:Pdlim7 / 286908 RGDID:628769 Length:464 Species:Rattus norvegicus


Alignment Length:488 Identity:127/488 - (26%)
Similarity:175/488 - (35%) Gaps:118/488 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 GHDFN-----------GSSTTPGYA-----------NQGSLPR-------QAAG--ASTGLSELD 131
            |.|||           |.:...|.|           |.|||..       :|.|  .|.|||...
  Rat    21 GKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQ 85

  Fly   132 SLLQDLQKIDVP------VNYSTPVSKYNTMNSYATVEERPSVDS--------------LLKELD 176
            ......||...|      ..::...|...|...:..   .|..||              ||::| 
  Rat    86 PAQSKPQKALTPPADPPRYTFAPSASLNKTARPFGA---PPPTDSALSQNGCRPLTSQQLLRQL- 146

  Fly   177 NAHIYAVPNGSAHK--------SPTPG----RHVTITVRETKTEKLTGPDGPVGTVEEQIVQQK- 228
                  ||:.|..:        .|.||    |...|....|.||.:..||........|:.:.: 
  Rat   147 ------VPDASKQRLMENTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEFMKKSSQVPRTEA 205

  Fly   229 ---DSYTPNHAVPGQQVHQAYTSQATKELDDLMASLSDFKVSNGTNGIGNGSHPQQHSSTVQHQT 290
               .|..|..:.||... .:.||:....:|...|.                .:....:|||.   
  Rat   206 PAPASTIPQESWPGPTT-PSPTSRPPWAVDPAFAE----------------RYAPDKTSTVL--- 250

  Fly   291 VTDYARPNKGSQQAHLTQTIEETTIVEDSREDQLDSMLGNLQANMSRQGVNTVQKGCCNACEKPI 355
                   .:.||.|..|.....|:||:        :..|......|..|...|    |:.|.|.|
  Rat   251 -------TRHSQPATPTPLQNRTSIVQ--------AAAGGGTGGGSNNGKTPV----CHQCHKII 296

  Fly   356 VGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCNGAILDKCVT 420
            .|:.:.|||..:|||.|.|:.|.:.|....|||..|..:|...|...::|.||.|...|..:.:.
  Rat   297 RGRYLVALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPSCYDVRYAPSCAKCKKKITGEIMH 361

  Fly   421 ALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAI--MENYISALNS 483
            ||..|||...|.||.|........|:..:|.|||..||.:||..||.||:..|  .:.::.||..
  Rat   362 ALKMTWHVPCFTCAACKTPIRNRAFYMEEGAPYCERDYEKMFGTKCRGCDFKIDAGDRFLEALGF 426

  Fly   484 QWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETH 516
            .||..||||..|:...:|.:|:..:..|.|::|
  Rat   427 SWHDTCFVCAICQINLEGKTFYSKKDKPLCKSH 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_523601.2 LIM1_Paxillin_like 348..400 CDD:259830 20/51 (39%)
LIM2_Paxillin_like 407..458 CDD:188723 18/50 (36%)
LIM3_Paxillin_like 466..518 CDD:188724 18/53 (34%)
LIM4_Paxillin 525..576 CDD:188795
Pdlim7XP_038951356.1 PDZ_PDLIM-like 5..83 CDD:467235 16/61 (26%)
PHA03247 <11..261 CDD:223021 56/276 (20%)
DUF4749 <163..192 CDD:464948 10/28 (36%)
LIM1_Enigma 289..340 CDD:188836 20/50 (40%)
LIM2_Enigma 348..399 CDD:188840 18/50 (36%)
LIM3_Enigma 407..461 CDD:188842 18/53 (34%)
Blue background indicates that the domain is not in the aligned region.

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