DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and pin-2

DIOPT Version :10

Sequence 1:NP_523601.2 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_001255672.1 Gene:pin-2 / 178234 WormBaseID:WBGene00004030 Length:330 Species:Caenorhabditis elegans


Alignment Length:322 Identity:74/322 - (22%)
Similarity:115/322 - (35%) Gaps:80/322 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 ANMSRQGVNTVQKGCCNACEKPI-VGQVITALG-KTWHPEHFTCNHCSQELGTRNFFERDGFPYC 395
            |.:::|..:..:...|..|.:.. :.:....|| .:||...|.|..|...|....:|:.:...||
 Worm     6 AQITKQRNSGKRHRACERCREQFELNEPYFLLGASSWHMRCFLCAQCMDPLVGTTYFQFENRIYC 70

  Fly   396 EPDYHNLFSPRCAYCNGAILDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDG---------- 450
            |.|:..|::|.||.||..::.:.|.:.:.::|...|.|.:|......:..:...|          
 Worm    71 EHDFKTLYAPVCAKCNEFVIGQVVHSSNNSYHLACFTCDECNVHLNSQIAYRYQGTILCFLCNQK 135

  Fly   451 KP---------------------YCRNDYF----------------------EMFAPK------- 465
            ||                     |..|.|.                      ::|.|:       
 Worm   136 KPKMRIYNCNKCKQHVDNSDLLTYQENPYHAYHFKCTTCKKVLESDARTIKDDLFCPRCFDFKCE 200

  Fly   466 -CNGCNRAI---MENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCA 526
             |..|.:.|   :|..|..:|..||.|.|.|..|.:||.|...::..|..||...:....|..|.
 Worm   201 VCFDCKKVIDPQVEQSIFTMNKHWHTDHFRCATCARPFFGHEHYEKNGKAYCRDDFLELIGHHCF 265

  Fly   527 GCSKPITGRCITAMFKKFHPEHFVCAFCLKQLNKGTFKEQKDK-------PYCHTCF-DKIF 580
            .|.:.:.|..:....|.|.||.:.|..|.|.|:      .|||       |.|..|. :|.|
 Worm   266 ICDRNVGGGMVHVFGKAFCPECYRCRGCDKVLH------YKDKVMELDLMPLCKKCLGNKTF 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_523601.2 LIM1_Paxillin_like 348..400 CDD:259830 15/53 (28%)
LIM2_Paxillin_like 407..458 CDD:188723 14/81 (17%)
LIM3_Paxillin_like 466..518 CDD:188724 18/54 (33%)
LIM4_Paxillin 525..576 CDD:188795 16/57 (28%)
pin-2NP_001255672.1 LIM1_PINCH 21..79 CDD:188717 16/57 (28%)
LIM 82..133 CDD:413332 10/50 (20%)
LIM 144..195 CDD:413332 5/50 (10%)
LIM4_PINCH 200..256 CDD:188720 18/55 (33%)
LIM 264..315 CDD:413332 16/56 (29%)

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