DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and alp-1

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_001023371.1 Gene:alp-1 / 177701 WormBaseID:WBGene00001132 Length:1424 Species:Caenorhabditis elegans


Alignment Length:429 Identity:123/429 - (28%)
Similarity:180/429 - (41%) Gaps:76/429 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 SELDSLLQD----LQKIDVPVNYSTPVSKYNTMNSYATVEERPS-----VDSLLKEL--DNAHIY 181
            ::|.:||:.    ||.:...:..:.|:.  |...|..||:..|:     |:.:.|::  |..|:.
 Worm  1031 TQLSTLLESAIVYLQNLRPELELTEPID--NDAKSLETVKFEPTRAEQRVNEIRKKVLEDLEHLP 1093

  Fly   182 AVPNGSAHKSPTPGRHVTITVRETKTEKLTGPDGPVGTVEEQIVQQ-----KDSYTPNHAVPGQQ 241
            .:.:|.....|.|...   .|...::.:...|..||...|..:.|.     .:.|:.....|.|.
 Worm  1094 ILGDGMDSVPPPPPER---KVFPFQSYQPIAPQFPVPAAESPVTQSLHDVLDEFYSLRKPTPTQN 1155

  Fly   242 VHQAYTSQATKELDDLMASLSDFKV-SNGTNGIGNGS---HPQQHSS---TVQHQTVTDYARP-- 297
            |.|:..:.|....:.|.:.|....: .|...|..|||   |.||.||   |...:|.|: .||  
 Worm  1156 VAQSSDTTAEDSRNFLASRLGQVMIDENKKAGGSNGSSQHHNQQGSSYTKTSFERTTTE-TRPQQ 1219

  Fly   298 NKGSQQA-------HLTQTIEETTIVEDSREDQLDSMLGNLQANMSRQGVNTVQKG----CCNAC 351
            |.|:.:|       |||.|   ||                           |.|.|    .|.:|
 Worm  1220 NTGAPRAGDFRGTGHLTTT---TT---------------------------TQQNGGRAPFCESC 1254

  Fly   352 EKPIVGQVITALGKTWHPEHFTC--NHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCNGAI 414
            ::.|.|..:.|.||:|.||||.|  :.|.:.|....|.|.||..:||..:....:|||..|:..|
 Worm  1255 KQQIRGAFVLATGKSWCPEHFVCANSSCRRRLLECGFVEEDGQKFCESCFEQHIAPRCNKCSKPI 1319

  Fly   415 LDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAIM--ENY 477
            :..|:.||.|.||...|.||.|.:.||...|:...|.|||..|:..:|..||..|...|.  :.:
 Worm  1320 ISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQGLPYCEQDWNALFTTKCVSCRYPIEAGDRW 1384

  Fly   478 ISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETH 516
            :.||.:.:|.:||.|..|....:|.|||...|.|:|..|
 Worm  1385 VEALGNAFHSNCFTCARCNHNLEGESFFAKNGQPFCRLH 1423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 21/53 (40%)
LIM2_Paxillin_like 407..458 CDD:188723 20/50 (40%)
LIM3_Paxillin_like 466..518 CDD:188724 18/53 (34%)
LIM4_Paxillin 525..576 CDD:188795
alp-1NP_001023371.1 PDZ_signaling 5..80 CDD:238492
DUF4749 137..>197 CDD:292558
ZM 137..162 CDD:128974
LIM_ALP_like 220..271 CDD:188746
LIM1_Enigma_like_1 1251..1304 CDD:188839 21/52 (40%)
LIM 1312..1363 CDD:295319 20/50 (40%)
LIM3_Enigma_like_1 1371..1424 CDD:188845 18/53 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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