DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and prkl-1

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_741435.2 Gene:prkl-1 / 177463 WormBaseID:WBGene00022727 Length:523 Species:Caenorhabditis elegans


Alignment Length:195 Identity:53/195 - (27%)
Similarity:74/195 - (37%) Gaps:39/195 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 CNACEKPI----VGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCA 408
            |..|.|.:    :..:....||.:||..|.|..|...|....:|..|...||...:.....||||
 Worm   149 CEKCPKRLEEGEISVMAARTGKRYHPSCFRCQTCDVLLVDLIYFAHDNQIYCGRHHAEQVKPRCA 213

  Fly   409 YCNGAIL-DKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRA 472
            .|:..|. |:|:.|..::||..||.||||.....::.:.:|..||.|.         ||      
 Worm   214 KCDEVIFGDECLEAEGRSWHFHHFQCAQCNDVLADQKYMQRANKPVCL---------KC------ 263

  Fly   473 IMENYISALNSQWH--PDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSL-CAGCSKPITG 534
                        :|  ...|.|..||..|...:....:|    :.|:||..... |..|||.:.|
 Worm   264 ------------FHSSSSTFSCTTCRLSFSSDTPHMSQG----DLHWHASAECFCCCVCSKNLLG 312

  Fly   535  534
             Worm   313  312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 15/55 (27%)
LIM2_Paxillin_like 407..458 CDD:188723 19/51 (37%)
LIM3_Paxillin_like 466..518 CDD:188724 9/53 (17%)
LIM4_Paxillin 525..576 CDD:188795 5/10 (50%)
prkl-1NP_741435.2 PET_Prickle 48..144 CDD:193602
LIM1_Testin_like 149..204 CDD:188726 15/54 (28%)
LIM2_Testin_like 210..262 CDD:188727 21/60 (35%)
LIM 283..324 CDD:295319 9/34 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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