Protein Alignment Pax and Pdlim3

DIOPT Version :9

• Sequence 1: NP_001033913.1
• Gene: Pax / 35215
• FlyBaseID: FBgn0041789
• Length: 581
• Species: Drosophila melanogaster
• Sequence 2: NP_446102.2
• Gene: Pdlim3 / 114108
• RGDID: 620427
• Length: 364
• Species: Rattus norvegicus
• Alignment Length: 414
• Identity: 87/414 - (21%)
• Similarity: 133/414 - (32%)
• Gaps: 127/414 - (30%)

  Fly     8 KIDPGARQPYRTARSKGILPGYALLADLQNSVPGQPQQPQPQYGTVQPKHQALQQQQFVDNTPGY 72
            :|.||::     |.:..:.||..:||     :.|        :||....|
  Rat    31 RITPGSK-----AEAANLCPGDVILA-----IDG--------FGTESMTH--------------- 62

  Fly    73 GSLRGKAQPQVYQEHYSV-------ETR--SPTAGHDFNGSSTTPGYANQGSLPRQAAGASTGLS 128
                ..||.::....|.:       |||  ||....|        |.|:...:
  Rat    63 ----ADAQDRIKAASYQLCLKIDRAETRLWSPQVSED--------GKAHPFKI------------ 103

  Fly   129 ELDSLLQDLQKIDVPVNYSTPVSKYNTMNSYATVEERPSVDSLLKELDNAHIYAVPNGSAHKSPT 193
            .|::..||       |||..  .|:|.......:..|.|..|....:|        .||...:|:
  Rat   104 NLEAEPQD-------VNYFE--HKHNIRPKPFIIPGRTSGCSTPSGID--------CGSGRSTPS 151

  Fly   194 PGRHV-TITVRETKTEKLTGPDGPVGTVEEQIVQQKDSYTPNHAVPGQQ-VHQAYTSQATKELDD 256
            ....| ||...:.|......|:.|:                ...:||.: ||..:.:......||
  Rat   152 SVSTVSTICPGDLKVAAKMAPNIPL----------------EMELPGVKIVHAQFNTPMQLYSDD 200

  Fly   257 LMASLSDFKVSNGTNGIGNGSH------PQQHSSTVQHQTVTDYARPNKGSQQAHLTQTIEETTI 315
            .:......:||.......:.|.      ||.....:.|....:.|.|    :|:...:.::|  :
  Rat   201 NIMETLQGQVSTALGETPSMSEPTASVPPQSDVYRMLHDNRDEPAAP----RQSGSFRVLQE--L 259

  Fly   316 VEDSREDQLDSMLGNLQANMSRQGVNTVQKGC--------CNACEKPIVGQVITALGKTWHPEHF 372
            |.|..:|:      .......|..|..|..|.        |:.|...|||.|:.|..|..|||.|
  Rat   260 VNDGSDDR------PAGTRSVRAPVTKVHGGAGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECF 318

  Fly   373 TCNHCSQELGTRNFFERDGFPYCE 396
            .|..|:..|..:.:|..:|..|||
  Rat   319 VCADCNLNLKQKGYFFVEGELYCE 342

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pax	NP_001033913.1	LIM1_Paxillin_like	348..400	CDD:259830	20/49 (41%)
		LIM2_Paxillin_like	407..458	CDD:188723
		LIM3_Paxillin_like	466..518	CDD:188724
		LIM4_Paxillin	525..576	CDD:188795
Pdlim3	NP_446102.2	PDZ_signaling	2..80	CDD:238492	15/85 (18%)
		DUF4749	184..263	CDD:406377	15/84 (18%)
		LIM_ALP	294..346	CDD:188834	20/49 (41%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1703
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900