Protein Alignment Pax and lims1

DIOPT Version :9

• Sequence 1: NP_001033913.1
• Gene: Pax / 35215
• FlyBaseID: FBgn0041789
• Length: 581
• Species: Drosophila melanogaster
• Sequence 2: XP_012812021.1
• Gene: lims1 / 100216119
• XenbaseID: XB-GENE-967923
• Length: 397
• Species: Xenopus tropicalis
• Alignment Length: 384
• Identity: 107/384 - (27%)
• Similarity: 163/384 - (42%)
• Gaps: 68/384 - (17%)

  Fly   233 PNHAVPGQQVHQAYTSQATKELDDLMASLSDFKVSNGTNGIGNGSHPQQHSSTVQHQTVTD-YAR 296
            |...||...|.|....:..|.:.:|....||.||                     ::.:.| |||
 Frog    18 PPMEVPNNFVPQEGGGEDEKPVSNLQRRRSDVKV---------------------YKEICDFYAR 61

  Fly   297 PNKGSQQAHLTQTIEETTIVEDSR-----EDQLDSMLGNL---QANMSRQGVNTVQKG------- 346
            .|..:..|:        .|.|..|     .:::.:..|.|   |..:..|......:|
 Frog    62 FNMANALAN--------AICERCRSGFAPSEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEG 118

  Fly   347 --------------CCNACEKPIVGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEP 397
                          ||:.|.:.|:|:||.|:..:||||.|.|:.|.|.|....|.:..|...|.|
 Frog   119 RKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDICQQVLADIGFVKNAGRHLCRP 183

  Fly   398 DYHNLFSPR------CAYCNGAILDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRN 456
             .||....|      |..|:..|.::.:...:..:|.:||.||.||::...:. .|..|:.||..
 Frog   184 -CHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLP 246

  Fly   457 DYFEMFAPKCNGCNRAIMENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKR 521
            .:.:|..|.|..|.|.|....::|:..|||.:.|||..|.:||.|...::.:||.||||||:...
 Frog   247 CHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 311

  Fly   522 GSLCAGCSKPITGRCITAMFKKFHPEHFVCAFCLKQLN-KGTFKEQKDKPYCHTCFDKI 579
            |.:|..|::.|.|..::|:.|.:....|.|:.|..:|. |..|.|...||.|..|::|:
 Frog   312 GDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKHKFVEIDLKPTCKHCYEKL 370

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pax	NP_001033913.1	LIM1_Paxillin_like	348..400	CDD:259830	20/51 (39%)
		LIM2_Paxillin_like	407..458	CDD:188723	14/50 (28%)
		LIM3_Paxillin_like	466..518	CDD:188724	22/51 (43%)
		LIM4_Paxillin	525..576	CDD:188795	16/51 (31%)
lims1	XP_012812021.1	LIM1_PINCH	73..131	CDD:188717	7/57 (12%)
		LIM2_PINCH	134..185	CDD:188718	20/51 (39%)
		LIM3_PINCH	198..248	CDD:188719	14/50 (28%)
		LIM4_PINCH	254..307	CDD:188720	22/52 (42%)
		LIM5_PINCH	315..368	CDD:188721	17/52 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1593918at2759
OrthoFinder	1	1.000	-	-		FOG0000055
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X39
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	4.010