DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax and pxn

DIOPT Version :9

Sequence 1:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_031752049.1 Gene:pxn / 100216044 XenbaseID:XB-GENE-941407 Length:1070 Species:Xenopus tropicalis


Alignment Length:637 Identity:261/637 - (40%)
Similarity:327/637 - (51%) Gaps:157/637 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 RTARSKGILPGYALLAD-------LQNSVPGQPQQPQPQYGTV---------QPKHQALQQQQFV 66
            ||.....:.|.|..|:.       :.|..|.|.:..:..:|..         .|:...|.:...:
 Frog   516 RTKEIPNVHPMYRDLSPRRKFGPAIYNKNPSQDRLIEELHGRFGIDKQETCKTPEDDWLTEGVII 580

  Fly    67 DNTPGYGSLRGKAQ----------PQVYQEHYSVETRSPTAGHDFN--GSSTTPGYANQGSL--- 116
            .:.|....|..:.|          ||:.::.:||.:..|...|...  ..||:|.   |.|.   
 Frog   581 TSRPSKNMLPSEQQIEKIIIPPDSPQLMRKSFSVSSSPPGTVHRTRLVSKSTSPA---QPSACVP 642

  Fly   117 -----------------PRQ-----AAGASTGLSELDSLLQDLQK-IDVPVNYSTPVSKYNTMNS 158
                             |:|     |||..         .|||.: :.:|.|.....:::...:.
 Frog   643 PPPPLPPIQSPAFIPHSPQQFPSWKAAGDD---------YQDLSRPLPLPHNKELSATRFLPPSP 698

  Fly   159 YATVEERPSVDSLLKELDNAHIY----------AVPNGSAHKSPTPGRHVTITVRETKTEKLTGP 213
            ..|:....|..|:..:.|...::          ..|...|...|:|                |.|
 Frog   699 LKTLPPNKSFVSVGCQTDETPLFPPIQLISPQTCSPALFARPPPSP----------------TLP 747

  Fly   214 DGPVGTV---------EEQIVQQKDSYTPNHAVPGQQVHQAYTSQATKELDDLMASLSDFK-VSN 268
            |...|.|         ||:.:.......|:            :|:.....:|:.:.::..| |||
 Frog   748 DKSSGLVLVPSLWPHPEERHLTSNSDMFPS------------SSKCLAPSNDIPSIMAKGKSVSN 800

  Fly   269 GTNGIGNGSHPQQHSSTVQHQTVTDYARPNKGSQQAHLTQTIEETTIVEDSREDQLDSMLGNLQA 333
                    |.|   |:|           |..||                     |||:|||:||:
 Frog   801 --------SPP---SNT-----------PKPGS---------------------QLDNMLGSLQS 822

  Fly   334 NMSRQGVNTVQKGCCNACEKPIVGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPD 398
            ::::.||.||.||.|.||:|||.|||:||:|||||||||.|.||.:|:|:||||||||.||||.|
 Frog   823 DLNKLGVATVAKGVCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKD 887

  Fly   399 YHNLFSPRCAYCNGAILDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFA 463
            |||||||||.||||.||||.|||||:|||.|||||||||..||.|||||||||.|||.|||:|||
 Frog   888 YHNLFSPRCFYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHERDGKAYCRKDYFDMFA 952

  Fly   464 PKCNGCNRAIMENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGC 528
            |||.||..||:||||||||:.|||:|||||:|..||..||||:|:|.||||.|||.:|||||:||
 Frog   953 PKCGGCTHAILENYISALNTLWHPECFVCRECFTPFINGSFFEHDGQPYCEMHYHERRGSLCSGC 1017

  Fly   529 SKPITGRCITAMFKKFHPEHFVCAFCLKQLNKGTFKEQKDKPYCHTCFDKIF 580
            .|||||||||||.|||||||||||||||||||||||||.|||||..||.|:|
 Frog  1018 QKPITGRCITAMGKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQNCFVKLF 1069

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 38/51 (75%)
LIM2_Paxillin_like 407..458 CDD:188723 40/50 (80%)
LIM3_Paxillin_like 466..518 CDD:188724 35/51 (69%)
LIM4_Paxillin 525..576 CDD:188795 44/50 (88%)
pxnXP_031752049.1 Paxillin 45..234 CDD:397550
LIM1_Paxillin_like 837..889 CDD:259830 38/51 (75%)
LIM2_Paxillin 896..947 CDD:188791 40/50 (80%)
LIM3_Paxillin_like 955..1007 CDD:188724 35/51 (69%)
LIM4_Paxillin 1014..1065 CDD:188795 44/50 (88%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 110 1.000 Domainoid score I6235
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 488 1.000 Inparanoid score I1399
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 1 1.000 - - oto103564
Panther 1 1.100 - - LDO PTHR24216
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1093
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.100

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