Protein Alignment Pax and lmcd1

DIOPT Version :9

• Sequence 1: NP_001033913.1
• Gene: Pax / 35215
• FlyBaseID: FBgn0041789
• Length: 581
• Species: Drosophila melanogaster
• Sequence 2: XP_012815919.1
• Gene: lmcd1 / 100124907
• XenbaseID: XB-GENE-966902
• Length: 352
• Species: Xenopus tropicalis
• Alignment Length: 284
• Identity: 64/284 - (22%)
• Similarity: 95/284 - (33%)
• Gaps: 76/284 - (26%)

  Fly   270 TNGIGNGSHP--------------QQHSSTVQHQTVTDYARPNKGSQQAH--------------- 305
            ||.|.:|..|              .|..:....:.:....:|..|::.||
 Frog    97 TNPITSGKDPTFLTVTYEWAPPGLNQKLAMQYMELIPKNMQPVAGTEGAHYRRVQLLRQLPPYDH 161

  Fly   306 ---LTQTI--EETTIVEDSREDQLDSMLGNLQANMSRQGVNTVQKGCCNACEKPIVGQVITALGK 365
               |.|.:  .|.|.:||..:...:..||..:..:........:|.  .:..|...|....|..|
 Frog   162 NPDLCQGLSERERTAMEDFVKRYKEQALGVAEVALPCSAKQQTEKN--GSKSKETNGTAKEAFEK 224

  Fly   366 TWHPEHFTCNHCSQELGTRN----FFERDGFPYCEPDYHNLFSPRCAYCNGAILDKCVTALDKTW 426
            |   |:| |..|.|.| :|:    :.||.||                              ||.|
 Frog   225 T---EYF-CEMCQQPL-SRDAPAVYAERAGF------------------------------DKQW 254

  Fly   427 HTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAIM-ENYISALNSQWHPDCF 490
            |...|.|.||.:......:..|:...:|...|.|...|:|.||::.|. |:|....:..||...|
 Frog   255 HPACFMCCQCREPLVNLIYFWRNNSLWCGRHYCESERPRCAGCDQMIFSEDYEQVDSGFWHRHHF 319

  Fly   491 VCRDCRQPFQGGSFFDHEGLPYCE 514
            .|.||.|...|..:...:..|.|:
 Frog   320 SCTDCDQTLSGKPYVLDKAQPLCD 343

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pax	NP_001033913.1	LIM1_Paxillin_like	348..400	CDD:259830	16/55 (29%)
		LIM2_Paxillin_like	407..458	CDD:188723	10/50 (20%)
		LIM3_Paxillin_like	466..518	CDD:188724	16/50 (32%)
		LIM4_Paxillin	525..576	CDD:188795
lmcd1	XP_012815919.1	PET_testin	111..198	CDD:193604	13/86 (15%)
		LIM1_Testin_like	229..286	CDD:188726	19/87 (22%)
		LIM	292..345	CDD:351770	17/52 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X39
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.000