DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17544 and gcdhb

DIOPT Version :9

Sequence 1:NP_001163015.1 Gene:CG17544 / 35213 FlyBaseID:FBgn0032775 Length:693 Species:Drosophila melanogaster
Sequence 2:NP_001006024.1 Gene:gcdhb / 450003 ZFINID:ZDB-GENE-041010-117 Length:427 Species:Danio rerio


Alignment Length:465 Identity:101/465 - (21%)
Similarity:178/465 - (38%) Gaps:128/465 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 RANFDWKRL----RLIFEKEQGLRIKYKVWRRLENDPLFAHPSRTLPMDEQKRLCAMQVNRMKHL 84
            :..|:|:..    .|:.|:|..:|..::.:.:          .:.:|     |:.....|.:.|.
Zfish    47 KVQFNWRDALDLEGLLTEEEIMIRDSFRTYCQ----------EKLMP-----RILMANRNEIFHR 96

  Fly    85 DLVPK--EIESLSFSAK------TKYLMY------INEALACYSPSLSVKIALGVGLFNNAIRAM 135
            ::|.:  |:..|..:.|      |.|:.|      :....:.|...:||:.:|.:    :.|.|.
Zfish    97 EIVSEMGELGVLGPTIKGYGCAGTSYVAYGLIAREVERVDSGYRSVMSVQSSLVM----HPINAY 157

  Fly   136 GTEKH-QKYIEAAWNREVITCLAITELSHGSNTKSIRTTATYDPTTQEFVINTPDFEAAKCWVGN 199
            |||:. |||:......|::.|..:||.:|||:..|:.|.|.|:.::..|.:.     .:|.|:.|
Zfish   158 GTEEQKQKYLPRLAQGEILGCFGLTEPNHGSDPGSMETKAKYNSSSHTFTLT-----GSKTWITN 217

  Fly   200 LGKTATVAMTFANLYTADGQNHGLHGFLIPIRDPKTLLSYPGVLVGDIGEKCGLNGIDNGFVVFT 264
             ...|.:.:.:|.  ..||:   :.||::. |..|      |:....|..|..|.....|.::..
Zfish   218 -SPVADICVVWAK--CEDGK---VRGFILE-RGMK------GLSTPKIEGKFSLRASATGMIIMD 269

  Fly   265 NYRIPRDNLLNRTSDVT-PEGVYESV-FTEPGKVLGAALESFSAGRIGIMQESANTLCSAAVIAV 327
            ...:|.:|||.:.|.:. |.|...:. :......||||...|.|.|                   
Zfish   270 EVEVPEENLLPKASGLAGPFGCLNNARYGIAWGALGAAEFCFHAAR------------------- 315

  Fly   328 RYSAVRKQFGPERHGEEMAILEYQLHQYRIFPYLA------AACVQ-------KIATEELTSTYM 379
            :|:..|.|||       :.:...||.|.::...|.      .:|:|       |.|..|:.|   
Zfish   316 QYTLDRIQFG-------VPLARNQLMQKKMADMLTEITLGLQSCLQLGRLIDDKKAAPEMIS--- 370

  Fly   380 EIIARSQADSNGFDVLTQNAAEIHALISSSKPLITWAARDAIQEAREACGGHGYLQAAKLGQMRT 444
                          :|.:|        |..|.|      |..::||:..||:|......:.:...
Zfish   371 --------------LLKRN--------SCGKAL------DIARQARDMLGGNGIADEYHIIRHVL 407

  Fly   445 DHDPLCTYEG 454
            :.:.:.||||
Zfish   408 NLEAVNTYEG 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17544NP_001163015.1 AXO 16..670 CDD:173839 101/465 (22%)
PLN02443 18..687 CDD:178062 101/465 (22%)
gcdhbNP_001006024.1 GCD 50..418 CDD:173840 101/462 (22%)
CaiA 62..426 CDD:224871 98/450 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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