DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17544 and gcdha

DIOPT Version :9

Sequence 1:NP_001163015.1 Gene:CG17544 / 35213 FlyBaseID:FBgn0032775 Length:693 Species:Drosophila melanogaster
Sequence 2:NP_957180.1 Gene:gcdha / 393860 ZFINID:ZDB-GENE-040426-1855 Length:441 Species:Danio rerio


Alignment Length:458 Identity:101/458 - (22%)
Similarity:175/458 - (38%) Gaps:106/458 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 RANFDWK-RLRL---IFEKEQGLRIKYKVWRRLENDPLFAHPSRTLPMDEQKRLCAMQVNRMKHL 84
            :..|||: .|.|   :.|:|..:|..::.:.   .|.|.   .|.:..:..:......:|.|..|
Zfish    48 KVTFDWRDALDLEGQLTEEEIMIRDSFRTYC---EDKLM---PRIIMANRNEHFHREILNEMGEL 106

  Fly    85 DLVPKEIESLSFSAKTKYLMY------INEALACYSPSLSVKIALGVGLFNNAIRAMGTEKH-QK 142
            .::...|:... .|.|.|:.|      :....:.|...:||:.:|.:    :.|.|.|||:. ||
Zfish   107 GVLGPTIQGYG-CAGTSYVAYGLIAREVERVDSGYRSVMSVQSSLVM----HPINAYGTEEQKQK 166

  Fly   143 YIEAAWNREVITCLAITELSHGSNTKSIRTTATYDPTTQEFVINTPDFEAAKCWVGNLGKTATVA 207
            |:......|::.|..:||.:|||:...:.|.|.|:|:::.:.|:     ..|.|:.| ...|.:.
Zfish   167 YLPKLARGEILGCFGLTEPNHGSDPAGMETKAKYNPSSRTYSIS-----GTKTWITN-SPYADIC 225

  Fly   208 MTFANLYTADGQNHGLHGFLIPIRDPKTLLSYPGVLVGDIGEKCGLNGIDNGFVVFTNYRIPRDN 272
            :.:|.  ..||:   :.||::. |..|      |:....|..|..|.....|.:|.....:|.:|
Zfish   226 VVWAK--CEDGK---VRGFVLE-RGMK------GLSTPKIEGKFSLRASATGMIVMDEVEVPEEN 278

  Fly   273 LLNRTSDVT-PEGVYESV-FTEPGKVLGAALESFSAGRIGIMQESANTLCSAAVIAVRYSAVRKQ 335
            ||...|.:. |.|...:. |......||||...|.|.|                   :|:..|.|
Zfish   279 LLPHVSGLAGPFGCLNNARFGIAWGALGAAEFCFHAAR-------------------QYTMDRIQ 324

  Fly   336 FGPERHGEEMAILEYQLHQYRIFPYLAAACVQKIATEELTSTYMEIIARSQADSNGFDVLTQNAA 400
            ||                    .|......:||...:.||...:.:               |:..
Zfish   325 FG--------------------VPLARNQLIQKKMADMLTEITIGL---------------QSCL 354

  Fly   401 EIHALISSSK---PLITWAAR-------DAIQEAREACGGHGYLQAAKLGQMRTDHDPLCTYEGD 455
            ::..||...|   .:|:...|       |..::||:..||:|......:.:...:.:.:.||||.
Zfish   355 QLGRLIDQKKHTPEMISLLKRNSCGKALDIARQARDMLGGNGIADEYHIIRHVMNLEAVNTYEGT 419

  Fly   456 NNV 458
            :::
Zfish   420 HDI 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17544NP_001163015.1 AXO 16..670 CDD:173839 101/458 (22%)
PLN02443 18..687 CDD:178062 101/458 (22%)
gcdhaNP_957180.1 GCD 51..437 CDD:173840 101/455 (22%)
CaiA 63..437 CDD:224871 96/443 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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