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Protein Alignment CG17544 and Ivd

DIOPT Version :9

Sequence 1:	NP_001163015.1	Gene:	CG17544 / 35213	FlyBaseID:	FBgn0032775	Length:	693	Species:	Drosophila melanogaster
Sequence 2:	NP_036724.1	Gene:	Ivd / 24513	RGDID:	2936	Length:	424	Species:	Rattus norvegicus

Alignment Length:	449	Identity:	111/449 - (24%)
Similarity:	179/449 - (39%)	Gaps:	118/449 - (26%)

- Green bases have known domain annotations that are detailed below.

  Fly    49 WR-RLENDPLFAHPSRT---LPMD--------EQKRLCAMQVNRMKHLDLVPK--EIES------ 93
            || |....|| |.|.|.   ||:|        |||:| ...:::....:|.||  ||:.
  Rat    15 WRLRPLPSPL-AVPQRAHSMLPVDDDINGLNEEQKQL-RHTISKFVQENLAPKAQEIDQSNDFKN 77

  Fly    94 -------------LSFSAKTKY----LMYINEALACYSPS-LSVKIALGVG-----LFNNAIRAM 135
                         |..:|..:|    |.|:...|.....| .|..:.|..|     ..|..:|..
  Rat    78 LREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNG 142

  Fly   136 GTEKHQKYIEAAWNREVITCLAITELSHGSNTKSIRTTATYDPTTQEFVINTPDFEAAKCWVGNL 200
            ...:.:||:....:.|.|..||::|.:.||:..|:|..|  :.....:|:|     ..|.|:.|
  Rat   143 NEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMRLKA--EKKGDHYVLN-----GNKFWITN- 199

  Fly   201 GKTATVAMTFANL-YTADGQNHGLHGFLIPIRDPKTLLSYPGVLVGDIGEKCGLNGIDNGFVVFT 264
            |..|.|.:.:|.. .||...:.|:..|::. :|      .||.......:|.|:.|.:...:||.
  Rat   200 GPDADVLVVYAKTDLTAVPASRGITAFIVE-KD------MPGFSTSKKLDKLGMRGSNTCELVFE 257

  Fly   265 NYRIPRDNLLNRTSDVTPEGVYESVFTEPGKVLGAALE----SFSAGRIGIMQESANTLCSAAVI 325
            :.::|..|:|::.|    :|||         ||.:.|:    ..:.|.:||||         ||:
  Rat   258 DCKVPAANILSQES----KGVY---------VLMSGLDLERLVLAGGPLGIMQ---------AVL 300

  Fly   326 --AVRYSAVRKQFGPERHGEEMAILEYQLHQYRIFPYLA--AACVQKIATEELTSTYMEIIARSQ 386
              .:.|..||:.||.:       |.::||.|.::.....  .||.|          |:..:||:.
  Rat   301 DHTIPYLHVREAFGQK-------IGQFQLMQGKMADMYTRLMACRQ----------YVYNVARAC 348

  Fly   387 ADSNGFDVLTQNAAEIHALISSSKPLITWAARDAIQEAREACGGHGYLQAAKLGQMRTD 445
            .:.:    :|  |.:...:|..:....|..|.|.||    ..||:||:....:|:...|
  Rat   349 DEGH----IT--AKDCAGVILYTAECATQVALDGIQ----CLGGNGYINDFPMGRFLRD 397

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.